Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30460 59 / 1e-11 RING/U-box superfamily protein (.1) AT1G15100 56 / 3e-10 RHA2A RING-H2 finger A2A (.1) AT4G32600 57 / 6e-10 RING/U-box superfamily protein (.1) AT1G60360 57 / 6e-10 RING/U-box superfamily protein (.1) AT2G01150 55 / 6e-10 RHA2B RING-H2 finger protein 2B (.1) AT1G68180 55 / 2e-09 RING/U-box superfamily protein (.1) AT3G05200 55 / 3e-09 ATL6 RING/U-box superfamily protein (.1) AT1G12760 54 / 4e-09 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) AT5G66070 54 / 4e-09 RING/U-box superfamily protein (.1.2) AT1G80400 54 / 4e-09 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016428 [exp] 232 / 2e-79 AT5G45290 59 / 2e-11 RING/U-box superfamily protein (.1.2) Lus10019686 [exp] 91 / 2e-23 AT1G72310 62 / 1e-11 RING/U-box superfamily protein (.1) Lus10016427 [exp] 83 / 4e-20 AT1G72310 59 / 4e-11 RING/U-box superfamily protein (.1) Lus10003617 [exp] 81 / 1e-19 AT2G01150 63 / 6e-13 RING-H2 finger protein 2B (.1) Lus10008235 [exp] 66 / 1e-13 AT5G20885 61 / 5e-12 RING/U-box superfamily protein (.1) Lus10007936 [exp] 62 / 2e-12 AT2G01150 104 / 3e-29 RING-H2 finger protein 2B (.1) Lus10013475 [exp] 57 / 1e-10 AT2G01150 104 / 2e-29 RING-H2 finger protein 2B (.1) Lus10034153 [exp] 57 / 2e-10 AT2G17450 79 / 2e-18 RING-H2 finger A3A (.1) Lus10007937 [exp] 55 / 5e-10 AT1G15100 100 / 2e-27 RING-H2 finger A2A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G081200 [exp] 78 / 1e-18 AT1G15100 74 / 3e-17 RING-H2 finger A2A (.1) Potri.007G086300 [exp] 74 / 7e-17 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1) Potri.007G086100 [exp] 68 / 8e-15 AT2G01150 71 / 3e-16 RING-H2 finger protein 2B (.1) Potri.005G081300 [exp] 67 / 2e-14 AT2G01150 75 / 1e-17 RING-H2 finger protein 2B (.1) Potri.007G086200 [exp] 64 / 2e-13 AT1G15100 74 / 5e-17 RING-H2 finger A2A (.1) Potri.006G144200 [exp] 64 / 6e-13 AT5G17600 90 / 3e-21 RING/U-box superfamily protein (.1) Potri.001G453800 [exp] 57 / 2e-10 AT5G47610 133 / 3e-39 RING/U-box superfamily protein (.1) Potri.018G034400 [exp] 56 / 9e-10 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1) Potri.006G247000 [exp] 56 / 1e-09 AT4G32600 498 / 1e-175 RING/U-box superfamily protein (.1) Potri.013G157000 [exp] 55 / 1e-09 AT3G10910 114 / 1e-32 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10019685 pacid=23139230 polypeptide=Lus10019685 locus=Lus10019685.g ID=Lus10019685.BGIv1.0 annot-version=v1.0 ATGTGGCCTTATAGCATCATCTCCGACCTCTACACAGTCGCCGTCTTCTTCACCGAGCTTCTACTCCTGAAACTCGCCGTCCTAACCCGACCCGACAGAA TAGCCCGAACCAAACCCACCACCACATACATCACCCGTCGCCAATTCGTCGAGGACATGTATCCATCGGCAAGATGGGTCTCCTCCTCGTCGGGGGAGAA GGAGGAGGAGGAGGAGTGCGCGGTTTGTTTGAGCGAGTTTGTGGCCGGAGAAGATGTGAGGGAACTGGGATGTAGACATAGTTTCCACAAGGATTGCGTT GACAAGTGGCTGTTTCGAGCCGATGATCGGAAGTTGGTTGCTGTTACTTGTCCGCTTTGCCGGAGGAAAGTTGATCTGCCGGCGGCGGAGGAGACGGCGG CGGTGGGCGGAGGAGATGAAGGAGATTGGGGGAGCCAGCAGTTTGTTCTGTTGTTGACGAAGTTACGTGGAGATCATGTATTTGATTAG
AA sequence Show only first row Show all	>Lus10019685 pacid=23139230 polypeptide=Lus10019685 locus=Lus10019685.g ID=Lus10019685.BGIv1.0 annot-version=v1.0 MWPYSIISDLYTVAVFFTELLLLKLAVLTRPDRIARTKPTTTYITRRQFVEDMYPSARWVSSSSGEKEEEEECAVCLSEFVAGEDVRELGCRHSFHKDCV DKWLFRADDRKLVAVTCPLCRRKVDLPAAEETAAVGGGDEGDWGSQQFVLLLTKLRGDHVFD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43200			Zinc finger, C3HC4 type (RING ...		Lus10019685 [exp]	0	1
AT5G50760			SAUR-like auxin-responsive pro...		Lus10011332 [exp]	1.4	0.9360
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10017487 [exp]	4.7	0.9089
AT5G39950		ATTRXH2, ATTRX2...	Arabidopsis thioredoxin h2, th...		Lus10005258 [exp]	6.9	0.8720
AT5G51160			Ankyrin repeat family protein ...		Lus10041537 [exp]	11.6	0.9074
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10017489 [exp]	12.2	0.9026
AT3G46540			ENTH/VHS family protein (.1)		Lus10016556 [exp]	13.4	0.8965
AT3G06240			F-box family protein (.1)		Lus10014793 [exp]	18.5	0.9068
AT5G41350			RING/U-box superfamily protein...		Lus10032270 [exp]	20.4	0.9039
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10018865 [exp]	20.8	0.8522
AT5G67400		RHS19	root hair specific 19 (.1)		Lus10032035 [exp]	24.3	0.8976

Compare expression of checked genes

Lus10019685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.