Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72310 62 / 8e-12 ATL3 RING/U-box superfamily protein (.1) AT3G16720 58 / 3e-10 ATL2 TOXICOS EN LEVADURA 2 (.1) AT5G20885 56 / 6e-10 RING/U-box superfamily protein (.1) AT1G15100 54 / 1e-09 RHA2A RING-H2 finger A2A (.1) AT1G63840 54 / 2e-09 RING/U-box superfamily protein (.1) AT4G15975 55 / 3e-09 RING/U-box superfamily protein (.1) AT3G20395 55 / 3e-09 RING/U-box superfamily protein (.1) AT2G35420 54 / 4e-09 RING/U-box superfamily protein (.1) AT3G43430 53 / 4e-09 RING/U-box superfamily protein (.1) AT3G62690 54 / 7e-09 ATL5 AtL5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016427 [exp] 275 / 1e-95 AT1G72310 59 / 4e-11 RING/U-box superfamily protein (.1) Lus10003617 [exp] 102 / 8e-28 AT2G01150 63 / 6e-13 RING-H2 finger protein 2B (.1) Lus10016428 [exp] 100 / 9e-27 AT5G45290 59 / 2e-11 RING/U-box superfamily protein (.1.2) Lus10019685 [exp] 92 / 1e-23 AT5G43200 62 / 4e-12 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10008235 [exp] 80 / 6e-19 AT5G20885 61 / 5e-12 RING/U-box superfamily protein (.1) Lus10017510 [exp] 55 / 1e-09 AT3G61460 176 / 6e-57 brassinosteroid-responsive RING-H2 (.1) Lus10037264 [exp] 56 / 3e-09 AT3G03550 144 / 3e-40 RING/U-box superfamily protein (.1) Lus10028773 [exp] 54 / 3e-09 AT3G61460 169 / 4e-54 brassinosteroid-responsive RING-H2 (.1) Lus10035677 [exp] 55 / 6e-09 AT3G03550 150 / 5e-42 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G086300 [exp] 89 / 2e-22 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1) Potri.007G086100 [exp] 76 / 1e-17 AT2G01150 71 / 3e-16 RING-H2 finger protein 2B (.1) Potri.005G081200 [exp] 73 / 1e-16 AT1G15100 74 / 3e-17 RING-H2 finger A2A (.1) Potri.007G086200 [exp] 72 / 3e-16 AT1G15100 74 / 5e-17 RING-H2 finger A2A (.1) Potri.005G081300 [exp] 68 / 1e-14 AT2G01150 75 / 1e-17 RING-H2 finger protein 2B (.1) Potri.010G072700 [exp] 57 / 6e-10 AT5G43420 300 / 7e-100 RING/U-box superfamily protein (.1) Potri.014G170400 [exp] 55 / 9e-10 AT2G04240 181 / 3e-59 RING/U-box superfamily protein (.1.2) Potri.008G125700 [exp] 55 / 1e-09 AT2G01150 125 / 5e-37 RING-H2 finger protein 2B (.1) Potri.008G165900 [exp] 56 / 2e-09 AT1G04360 312 / 2e-104 RING/U-box superfamily protein (.1) Potri.003G093500 [exp] 56 / 2e-09 AT4G17920 186 / 1e-57 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10019686 pacid=23139301 polypeptide=Lus10019686 locus=Lus10019686.g ID=Lus10019686.BGIv1.0 annot-version=v1.0 ATGGCGCCCATCCAAACACCAACCCTCGTCGCCGATCTCTACACCGTCGCCAAATTCTTCATCAAACTCTTCCTCCTCCGCCTCACCATCCTCTTCCGCT CCTCCTCCGCCGCCTCTCCTCCGTCCTCTTCCCGCCAAGCAACCACCAACCCACTACTCGACTTCGTAAATGAAAAGTACCCACCAACCCATTTCTACTC CGACGACCGGCCGGAGGATGAGTGCTCGGTGTGCCTCCGCGAGTTCTCCAAAGGCGACGCCGTGAGGAAGCTGGGTTGCGACCATACTTTCCACGTGGAC TGCCTGGACCGGTGGTTTGACCAGGAGGTGGCGAATAAGTGGCGGAAAGGGGGGAGTAATTTTGTCGTGACGTGTCCGCTTTGCCGGAGCGGACTCTCGT CGCCGGGACGAGTGGATCATCGGCGGTTGGGTGATGGTGTGGCGGGGACCACGGGGGATGACAGCTTGGAGTGGGGCCAGCAACAGCTCGTTCTTTTGTT GGCTTCCTTGCGCGGCGATCATGAAATATCTACTACGCAATACTAA
AA sequence Show only first row Show all	>Lus10019686 pacid=23139301 polypeptide=Lus10019686 locus=Lus10019686.g ID=Lus10019686.BGIv1.0 annot-version=v1.0 MAPIQTPTLVADLYTVAKFFIKLFLLRLTILFRSSSAASPPSSSRQATTNPLLDFVNEKYPPTHFYSDDRPEDECSVCLREFSKGDAVRKLGCDHTFHVD CLDRWFDQEVANKWRKGGSNFVVTCPLCRSGLSSPGRVDHRRLGDGVAGTTGDDSLEWGQQQLVLLLASLRGDHEISTTQY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72310		ATL3	RING/U-box superfamily protein...		Lus10019686 [exp]	0	1
AT1G18980			RmlC-like cupins superfamily p...		Lus10036658 [exp]	8.3	0.9208
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10037585 [exp]	11.1	0.9506
AT1G06475			unknown protein		Lus10004931 [exp]	12.0	0.9450
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10019348 [exp]	12.3	0.9540
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10014146 [exp]	12.4	0.9549
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10028947 [exp]	13.9	0.8993
					Lus10031841 [exp]	18.7	0.9496
					Lus10018014 [exp]	26.3	0.9220
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10027638 [exp]	26.8	0.9284
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032641 [exp]	29.5	0.9383

Compare expression of checked genes

Lus10019686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.