Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22120 491 / 5e-176 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT1G11020 180 / 3e-54 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G50440 137 / 1e-38 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) AT3G47550 46 / 1e-05 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT5G62460 44 / 6e-05 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G02610 42 / 0.0003 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 42 / 0.0004 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016426 [exp] 578 / 0 AT2G22120 543 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10033053 [exp] 190 / 4e-58 AT1G11020 457 / 2e-163 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017764 [exp] 139 / 7e-40 AT1G11020 254 / 3e-85 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10034832 [exp] 134 / 3e-35 AT1G50440 379 / 7e-131 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Lus10033381 [exp] 119 / 1e-30 AT1G50440 340 / 1e-117 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Lus10014172 [exp] 94 / 2e-24 AT2G22120 71 / 2e-16 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10035010 [exp] 45 / 4e-05 AT3G47550 284 / 8e-96 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10037172 [exp] 45 / 4e-05 AT2G02960 303 / 5e-104 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10002282 [exp] 45 / 4e-05 AT5G38070 219 / 6e-71 RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G081500 [exp] 527 / 0 AT2G22120 521 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.007G085900 [exp] 426 / 2e-151 AT2G22120 388 / 4e-136 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.018G073400 [exp] 214 / 2e-67 AT1G11020 389 / 2e-136 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G154800 [exp] 208 / 2e-65 AT1G11020 406 / 4e-143 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G252900 [exp] 138 / 6e-39 AT1G50440 370 / 5e-131 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Potri.008G005800 [exp] 135 / 8e-38 AT1G50440 374 / 2e-132 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Potri.010G014800 [exp] 46 / 2e-05 AT3G06330 409 / 8e-141 RING/U-box superfamily protein (.1.2.3) Potri.004G093500 [exp] 46 / 2e-05 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G014950 [exp] 45 / 3e-05 AT3G06330 409 / 5e-141 RING/U-box superfamily protein (.1.2.3) Potri.008G086300 [exp] 45 / 5e-05 AT2G02960 252 / 9e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019687 pacid=23139207 polypeptide=Lus10019687 locus=Lus10019687.g ID=Lus10019687.BGIv1.0 annot-version=v1.0 ATGGCTGATCATGCTGACTCGTCGCCGCTCGTCCCTCCAACGCCGATCACCAGTGAAGACTCCGAGATCGACCTCGAGGCCGGCCCCGGAGACCAAATTC AGTGCCGAATTTGCCTCGAAACTGACGGGAGGGATTTCATTGCACCTTGCAAGTGCAAAGGCACATCAAAGTATGTACATAGAGAATGTTTGGATCATTG GCGAGCTGTGAGGGAAGGCTTTGCATTTGCACATTGCACAACTTGCAAGGCACCTTACCATCTGAGAGTTCATGCTGCAGCAGATAGGAAATGGAGAACG ATGAAGTTTAGGTTCTTTGTGACAAGGGACATTGCTTTTATATTTCTGACGGTTCAACTTGTCATTGCCTCGTTGGCATATTTGTTTTATGTAGTCGATG CCTATCAGCAGTCATGGATACGTCTTACATGGGGATTCGAGAGTGGAATTAGTTTCTACTATATATGTGGAGCATTGCTGTTTTTCGCCTTGCTGGGTCT ATCAGGGTGCTTCATCACTTGCTATGACCGCAGAGTTCGCAATGATTTGGCTCAACCTTGTAGAGAGTTGTGTCTTTGCTGTTGTCATCCCGGAATGTGT GCCGACTGCCATTTGCCTGGAACTCTTTGTATGTGGACTGACTGCACCACATGCTTTGAAGGCTGTGCTAGTGCAGCAGGAGAATGTGGGTGCTTAGGAG GTGCTGGTGAAGCAGGGTTACCGTTACTCTTCATTATGGCTTTGATAGTACTCGGACTATTCACCGTGATCGGCATATTCTATAGTGTGTTGGTCGCCAC GATGGTAGGGCAACGAATTTGGCAGCGCCATTATCACATACTCGCGAAACGGATGCTGACCAAGGAGTACGTTGTCGAGGATGTTGACGGAGAGATGACG GAATCGGATTGGACACCGCCGGCTCTTCCACCAGAGCACGTCCAGCAGCTGAAGAATCTCGGCCTCTTATAA
AA sequence Show only first row Show all	>Lus10019687 pacid=23139207 polypeptide=Lus10019687 locus=Lus10019687.g ID=Lus10019687.BGIv1.0 annot-version=v1.0 MADHADSSPLVPPTPITSEDSEIDLEAGPGDQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRVHAAADRKWRT MKFRFFVTRDIAFIFLTVQLVIASLAYLFYVVDAYQQSWIRLTWGFESGISFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCHPGMC ADCHLPGTLCMWTDCTTCFEGCASAAGECGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMT ESDWTPPALPPEHVQQLKNLGLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22120			RING/FYVE/PHD zinc finger supe...		Lus10019687 [exp]	0	1
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Lus10031445 [exp]	1.0	0.8915
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10027883 [exp]	2.4	0.8525
AT1G63850			BTB/POZ domain-containing prot...		Lus10040458 [exp]	8.0	0.8370
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Lus10041132 [exp]	10.6	0.8054
AT4G32250			Protein kinase superfamily pro...		Lus10001499 [exp]	10.7	0.8375
AT3G59910			Ankyrin repeat family protein ...		Lus10010581 [exp]	11.0	0.8237
AT4G03030			Galactose oxidase/kelch repeat...		Lus10000704 [exp]	13.6	0.7994
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10028560 [exp]	20.0	0.8173
AT1G25280	TUB	AtTLP10	tubby like protein 10 (.1.2.3)		Lus10043482 [exp]	22.6	0.7266
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004561 [exp]	24.5	0.7571

Compare expression of checked genes

Lus10019687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.