Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44350 769 / 0 CSY4, ATCS CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2) AT3G60100 732 / 0 CSY5 citrate synthase 5 (.1) AT2G42790 114 / 3e-27 CSY3 citrate synthase 3 (.1) AT3G58750 113 / 4e-27 CSY2 citrate synthase 2 (.1) AT3G58740 84 / 2e-17 CSY1 citrate synthase 1 (.1) AT2G11270 52 / 1e-08 citrate synthase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006943 [exp] 449 / 6e-157 AT2G44350 428 / 2e-148 CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2) Lus10031384 [exp] 117 / 4e-28 AT3G58750 796 / 0.0 citrate synthase 2 (.1) Lus10010945 [exp] 115 / 1e-27 AT2G42790 855 / 0.0 citrate synthase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G230500 [exp] 798 / 0 AT2G44350 792 / 0.0 CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2) Potri.009G023900 [exp] 147 / 2e-43 AT2G44350 143 / 2e-42 CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2) Potri.016G089300 [exp] 114 / 1e-27 AT3G58750 855 / 0.0 citrate synthase 2 (.1) Potri.014G141900 [exp] 111 / 2e-26 AT3G58750 867 / 0.0 citrate synthase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00285 [flax] [poplar] Citrate_synt Citrate synthase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019688 pacid=23139285 polypeptide=Lus10019688 locus=Lus10019688.g ID=Lus10019688.BGIv1.0 annot-version=v1.0 ATGCAGGCCTCCACCGATCTTGATCTACATTCCCAGTTAAAGGAGTTGATCCCAGAACAACAGGAACGCCTTAAGAAAATTAGGACAGACTATGGAAAAG TTGAACTGGGGAACATCACCACTGACATGGTAATTGGTGGAATGAGAGGAATGATTGGATTGCTATGGGAGACCTCTCTGCTTGATCCCGAAGAGGGAAT TCGGTTCAGAGGCCTTTCAATCCCTGAATGTCAAAAGGTGCTGCCAGGTGCATCGCCTGATGGAGAACCATTGCCTGAGGGTCTTCTTTGGCTTCTTCTA ACCGGAAAGGTTCCAAGCAAGGAGCAAGTTCATGCCTTATCAAAGGAATTGCGTGACCGTGCTAAAGTTCCAGATTACGCATTTAAGGCCATTGATGCTC TCCCTGTCTCAGCCCACCCAATGACTCAGTTTGCAACTGGTGTTATGGCACTTCAGGTTCAAAGTGAGTTTCAGAAAGCATATGACCAGGGTATTCACAA ATCAAAGTACTGGGAGCCAACCTATGAAGATTCTCTTAATCTGATTGCTCGTTTGCCAGCAGTAGCTTCATATGTTTACCGAAGGATATTCAAGGATGGA AAGATTATACCCGCGGATGATTCTCTTGATTACGGCGCAAATTTCTCACATATGTTGGGTTTTAGTGATCCCAAAATGCACGAGCTTATGAGGCTCTATG TAACAATCCATAGTGACCATGAAGGCGGTAATGTTAGTGCACACACTGGCCATCTGGTTTCCAGTGCACTTTCGGATCCTTACCTTTCATTTGCAGCCGC ATTAAATGGTTTAGCTGGGCCACTTCACGGCCTGGCTAATCAGGAAGTTTTGCTATGGATCAAATCTGTCGTGGAGGAATGTGGGGAAAACATAAGTACC GAACAATTGAAAGACTACGTGTGGAAGACATTGAACAGCGGAAAGGTCGTTCCAGGATTCGGACACGGAGTCCTACGAAAAACTGATCCAAGATACACAT GCCAGAGAGAGTTCGCATTGAAGCATTTACCGGAGGACCCACTCTTCCAGCTGGTTTCTAAGCTCTACGACGTCGTGCCACCAATCCTTACTGAGTTGGG GAAGGTTAAGAACCCCTGGCCCAATGTTGATGCCCACAGTGGAGTGCTGTTGAACTACTACGGTCTAACAGAAGCCAGGTATTATACTGTTCTGTTTGGC GTCTCGAGGAGCATCGGAATCTGCTCTCAGCTAATATGGGACCGAGCTCTCGGGTTGCCACTCGAGAGGCCGAAAAGTGTCACGATGGACTGGCTCGAAA GCCGCTGCAGGAAAGCATGA
AA sequence Show only first row Show all	>Lus10019688 pacid=23139285 polypeptide=Lus10019688 locus=Lus10019688.g ID=Lus10019688.BGIv1.0 annot-version=v1.0 MQASTDLDLHSQLKELIPEQQERLKKIRTDYGKVELGNITTDMVIGGMRGMIGLLWETSLLDPEEGIRFRGLSIPECQKVLPGASPDGEPLPEGLLWLLL TGKVPSKEQVHALSKELRDRAKVPDYAFKAIDALPVSAHPMTQFATGVMALQVQSEFQKAYDQGIHKSKYWEPTYEDSLNLIARLPAVASYVYRRIFKDG KIIPADDSLDYGANFSHMLGFSDPKMHELMRLYVTIHSDHEGGNVSAHTGHLVSSALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVEECGENIST EQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPEDPLFQLVSKLYDVVPPILTELGKVKNPWPNVDAHSGVLLNYYGLTEARYYTVLFG VSRSIGICSQLIWDRALGLPLERPKSVTMDWLESRCRKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Lus10019688 [exp]	0	1
AT1G67570			Protein of unknown function (D...		Lus10006430 [exp]	4.0	0.7689
AT4G03260			Outer arm dynein light chain 1...		Lus10018514 [exp]	10.6	0.7431
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10042830 [exp]	11.0	0.7491
AT3G01930			Major facilitator superfamily ...		Lus10032034 [exp]	14.1	0.6783
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10000988 [exp]	15.6	0.7350
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Lus10025605 [exp]	18.4	0.7362
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10028713 [exp]	31.9	0.7429
AT5G53870		AtENODL1	early nodulin-like protein 1 (...		Lus10009196 [exp]	33.3	0.6142
AT4G03260			Outer arm dynein light chain 1...		Lus10039729 [exp]	33.4	0.6831
AT5G02040		PRA1.A1	prenylated RAB acceptor 1.A1 (...		Lus10022592 [exp]	35.2	0.7438

Compare expression of checked genes

Lus10019688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.