Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22070 243 / 3e-77 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G39680 178 / 3e-53 EMB2744 EMBRYO DEFECTIVE 2744, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02010 172 / 1e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33170 170 / 9e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 166 / 8e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09950 166 / 3e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 165 / 4e-48 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G52630 162 / 8e-48 MEF1 mitochondrial RNAediting factor 1 (.1) AT1G25360 163 / 2e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 163 / 3e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016425 [exp] 293 / 6e-96 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10040577 [exp] 184 / 7e-58 AT1G25360 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001483 [exp] 172 / 7e-51 AT5G39680 691 / 0.0 EMBRYO DEFECTIVE 2744, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020588 [exp] 163 / 1e-50 AT2G27610 422 / 2e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031994 [exp] 170 / 9e-50 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030908 [exp] 169 / 2e-49 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10022629 [exp] 167 / 2e-49 AT2G41080 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 169 / 3e-49 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035157 [exp] 155 / 3e-49 AT3G26782 221 / 2e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G085500 [exp] 254 / 3e-81 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G001200 [exp] 179 / 5e-54 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G027800 [exp] 177 / 1e-52 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G053500 [exp] 175 / 2e-52 AT5G52630 785 / 0.0 mitochondrial RNAediting factor 1 (.1) Potri.001G075800 [exp] 177 / 3e-52 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G084900 [exp] 175 / 4e-52 AT5G39680 782 / 0.0 EMBRYO DEFECTIVE 2744, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G322100 [exp] 173 / 2e-51 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 171 / 7e-51 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G075000 [exp] 171 / 1e-50 AT2G41080 755 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 171 / 6e-50 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019689 pacid=23139190 polypeptide=Lus10019689 locus=Lus10019689.g ID=Lus10019689.BGIv1.0 annot-version=v1.0 ATGAAGGATAGAGGAGTTAAGAAAGAGCAAGGTTCCAGCTGGGTTCAGATTAAGAACAGGGTTCATGTGTTTGGTGCTGAAGATGGGGTGCATCCTGAGA GAGAGGAGATATATAAGAAGATGGATGAGATATGGGACGAGATAAAAAGAATGGGGTTCGTCCCGGATTCTGCATCGGTACTGCATGATCTTGAGATGGA GGTTAAGGATCGGATTCTGAGGTATCACAGTGAGAAGCTTGCTATTGCATTTGGACTGATAAGTACGCCGGAGAAGACGACTCTCAGGATAATGAAGAAT CTCAGAATCTGTAACGACTGTCACACTGCTGTCAAGTATATCTCCAAGCTTGTGAGTAGGGAAATTGTTGTTAGAGATGCTACCCGCATCCACCATTTTA AAGATGGTCCCTGTTCTTGTATGAACTACTGGTAA
AA sequence Show only first row Show all	>Lus10019689 pacid=23139190 polypeptide=Lus10019689 locus=Lus10019689.g ID=Lus10019689.BGIv1.0 annot-version=v1.0 MKDRGVKKEQGSSWVQIKNRVHVFGAEDGVHPEREEIYKKMDEIWDEIKRMGFVPDSASVLHDLEMEVKDRILRYHSEKLAIAFGLISTPEKTTLRIMKN LRICNDCHTAVKYISKLVSREIVVRDATRIHHFKDGPCSCMNYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22070			pentatricopeptide (PPR) repeat...		Lus10019689 [exp]	0	1
AT3G05140		RBK2	ROP binding protein kinases 2 ...		Lus10018959 [exp]	1.0	0.7173
AT1G48120			hydrolases;protein serine/thre...		Lus10008255 [exp]	13.1	0.6926
AT2G15220			Plant basic secretory protein ...		Lus10019802 [exp]	14.1	0.6916
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10009726 [exp]	15.5	0.6736
					Lus10027005 [exp]	19.4	0.7035
					Lus10005514 [exp]	21.0	0.6425
AT1G61320			FBD / Leucine Rich Repeat doma...		Lus10010664 [exp]	22.1	0.6425
AT5G12060			Plant self-incompatibility pro...		Lus10030964 [exp]	23.2	0.6425
AT2G04865			Aminotransferase-like, plant m...		Lus10014633 [exp]	24.2	0.6425
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10017015 [exp]	25.2	0.6425

Compare expression of checked genes

Lus10019689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.