Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019691 [exp] 372 / 5e-123 ND / Lus10016424 [exp] 280 / 1e-87 ND / Lus10019212 [exp] 241 / 4e-72 ND / Lus10019211 [exp] 230 / 3e-70 ND / Lus10000478 [exp] 211 / 3e-60 ND 41 / 0.004 Lus10004308 [exp] 198 / 2e-58 ND / Lus10000479 [exp] 205 / 5e-58 ND / Lus10004305 [exp] 192 / 2e-53 ND / Lus10004306 [exp] 144 / 4e-38 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019690 pacid=23139183 polypeptide=Lus10019690 locus=Lus10019690.g ID=Lus10019690.BGIv1.0 annot-version=v1.0 ATGGCTCCATTTGATTTCAAGTTGGAAATCCATTTTGTTGATGATGATGATGATGATGGTGTATATGGTGGGCTTCTGTTCTTCGATGGTCATGGAAGAA TCGACGAACGAGAAGCGCTGACCATACTTGCCCAACACCTGAAGCAGTTACGCTTGCTAGTGAGTCCAGAAGGGTATTGTTTCCAACAAGTATCAGAGTT TGGAGTCTACTCCGACTTTGGCATCCACTATGTTCGACTGAACGATCTTTTCAGCTGGCCTCGTTGTGGGGTCGAACTTGTGACAATCAACTCGTGGACT AGGTTAGAGCTCAAGTACTCGAAGGGCGGCCATCTTCCCAAGTATCACAACAATCCGACATCATCAAAGCCAATCTCTTGTGGCGGGGCATGTAAGGCGA AGCACGCGGAGTTGGAGAGGTTGGTGAAAGAGAAAGACAAGGAACTACGAATGTTTAAGATGAAGAAGGATAATGATGATGAGGAGAAGGCGAAAGAACA GAGGATAGACGAGCTAGAAAAGCAGAACGAGGCTCTGGAGGAGGCTAATAAAACCAAGGATGAGGAGTTACAAAAGCTAGCCAAGTCCAAGAATACCAAT GAGCTACAGAGACAATTGAAGAAGAAAGACGACCAATTACAGATGCTGAAAAAGAAGAAGGACGAGGAGGACGAGGCGAAAGAAAAAAGGATAGAAGAGC TACAGAAGCTGAATGAGGAATTAGAAGAAGGGAATAAAGTAAAAGAGGAGGAATTGCAAAAGCTAGCCAAGTCGAAGAACATGGGCGAGATGCAGAGACA ATTGAAAAAGAAAAATGATGAGTTGCAGTTGTTGAAGAAGAAGAAGGACGAGGAGGAAGAGGTTAGAGTACAAAGGATAGACGAGCTAGAAAAGCAGAAT GAGAACTTGGAGGAAGCGAATAGAGCAAAGGATGACGAATTGCGGAAGCTAGCCAAATCGAAGAAGAATGGGGTGGAGAAGAATGATGAAACAACACAAA CGAGAAAGGTGGAGGAGGTAAGCTCCAGTGCGGCGAAGGTGGCAGAGGTGAGGAAAGAACTGGAGGAATGTCAACGGAAGTCGTGGGCGATTCTACCTTC TACTAAGTACCTAATTAAACCTGATTACAGAGACAAGTATTTGACAACAAGACAACGGGTTCCACCGACAACTTTCGGGTGTGTTCCTCAAATGATTTTC CCTTACGTGAATAACTCACCAAAATTGGTGGATAAGATGAGGGTTGACGCAGACTACGGTGTGAGGATTGTTGATGAGGAAAGCAATCCTGGTGAATGGC CACCGCCGCCGGGAATCATAGTACATCTCGGGAAAGGCGATGCGGATTTCGACAAGAACAACTGGTGGTATTTGAAGACCACCCACAGAGAAGGTGGGTT GACGATGATGGTATATTACGAAGGAAGTCGATCTCAAATTTCTACTTATCCTTACCCCTACCAAGATAATATTATTCCCTTGCCGTTTTCTAATGGTATT CTTGAGGTTTATACGTTTTTTAGTCACTTCGCCCTCTTTAGGCTCCCATTTGGAGTGCGATATGGTTTTGCATACCGTCTGCAGTAA
AA sequence Show only first row Show all	>Lus10019690 pacid=23139183 polypeptide=Lus10019690 locus=Lus10019690.g ID=Lus10019690.BGIv1.0 annot-version=v1.0 MAPFDFKLEIHFVDDDDDDGVYGGLLFFDGHGRIDEREALTILAQHLKQLRLLVSPEGYCFQQVSEFGVYSDFGIHYVRLNDLFSWPRCGVELVTINSWT RLELKYSKGGHLPKYHNNPTSSKPISCGGACKAKHAELERLVKEKDKELRMFKMKKDNDDEEKAKEQRIDELEKQNEALEEANKTKDEELQKLAKSKNTN ELQRQLKKKDDQLQMLKKKKDEEDEAKEKRIEELQKLNEELEEGNKVKEEELQKLAKSKNMGEMQRQLKKKNDELQLLKKKKDEEEEVRVQRIDELEKQN ENLEEANRAKDDELRKLAKSKKNGVEKNDETTQTRKVEEVSSSAAKVAEVRKELEECQRKSWAILPSTKYLIKPDYRDKYLTTRQRVPPTTFGCVPQMIF PYVNNSPKLVDKMRVDADYGVRIVDEESNPGEWPPPPGIIVHLGKGDADFDKNNWWYLKTTHREGGLTMMVYYEGSRSQISTYPYPYQDNIIPLPFSNGI LEVYTFFSHFALFRLPFGVRYGFAYRLQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019690 [exp]	0	1
					Lus10019691 [exp]	1.0	0.9887
AT5G50200		WR3, ATNRT3.1, ...	WOUND-RESPONSIVE 3, NITRATE TR...		Lus10041950 [exp]	4.9	0.8944
AT3G29034			unknown protein		Lus10033010 [exp]	8.0	0.9031
AT1G72230			Cupredoxin superfamily protein...		Lus10025580 [exp]	9.9	0.9072
AT2G23560		ATMES7	ARABIDOPSIS THALIANA METHYL ES...		Lus10000840 [exp]	13.3	0.8348
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10024246 [exp]	13.6	0.9096
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10020968 [exp]	16.9	0.8683
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10041064 [exp]	18.7	0.8934
AT2G44340			VQ motif-containing protein (....		Lus10021054 [exp]	21.2	0.8633
AT2G34830	WRKY	ATWRKY35, WRKY3...	maternal effect embryo arrest ...		Lus10038426 [exp]	22.7	0.8990

Compare expression of checked genes

Lus10019690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.