Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019690 [exp] 473 / 1e-162 ND / Lus10000479 [exp] 291 / 5e-90 ND / Lus10000478 [exp] 285 / 6e-88 ND 41 / 0.004 Lus10000475 [exp] 277 / 3e-85 ND / Lus10004305 [exp] 271 / 2e-82 ND / Lus10042237 [exp] 226 / 4e-65 AT4G27595 44 / 5e-04 Plant protein of unknown function (DUF827) (.1) Lus10016424 [exp] 221 / 4e-65 ND / Lus10004306 [exp] 213 / 6e-64 ND / Lus10019212 [exp] 219 / 1e-63 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019691 pacid=23139276 polypeptide=Lus10019691 locus=Lus10019691.g ID=Lus10019691.BGIv1.0 annot-version=v1.0 ATGGCTCCATTTGATTTCAAGTTGGAAATCCATTTTGTTGGTTCTTCTGATGGAACTTCCCTCCAAGTCTATGAACTAACCAAATCTCCAACTCACTTCT CTTCCATCCAAAAGGCCGATTGGAAGAAAGTTGCCACCATTAATCCAAAACAAGATGATGATGATGATGATGGTGTATATGGTGGGCTTCTGTTCTTCGA TGGTCATGGAAGAATCGACGAACGAGAAGCGCTGACCATGCTTGCCCAACACCTGAAGCAGTTACGCTTGCTAGTGAGTCCAGAAGGGTATTGTTTCCAA CAAGTATCAGAGTTTGGAGTCTACTCCGACTTTGGCATCCACTATGTTCGACTGAACGATCTTTTCAGCTGGCCTCGTTGTGGGGTCGAACTTGTGACAA TCAACTCGTGGACTAGGTTAGAGCTCAAGTACTCGAAGGGCGGCCATCTTCCCAAGTATCACAACAATCCGACATCATCAAAGCCAATCTCTTGTGGCGG GGCATGTAAGGCGAAGCACGCGGAGTTGGAGAGGTTGGTGAAAGAGAAAGACAAGGAACTACGAATGTTTAAGATGAAGAAGGATAATGATGATGAGGAG AAGGCGAAAGAACAGAGGATAGACGAGCTAGAGAAGCTTAACGACGCTTTGGAGGAGGCAAATAAAACCAAGGACGAAGAATTGCAAAAGCTTGCCAAGT CGAAGAATGTCGGCGAGATGCAAAGGCAACTAAAAAAGAAGGAAGGTGAATTAGTGATGCTTAAGAAGAAGAAGGACGAGGAGGTGGAGGCGAAAGAACA GAGGATAGACGAGCTAGAGAAGCTTAACGACGCTTTGGAGGAGGCAAATAAAACCAAGGACGAAGAATTGCAAAAGCTTGCCAAGTCGAAGAATGTCGGC GAGATGCAAAGGCAACTAAAAAAGAAGGAAGGTGAATTAGTGATGCTTAAGAAGAAGAAGGACGAGGAGGTGGAGGCGAAAGAACAGAGGATAGACGAGC TAGAGAAGCTTAACGACGCTTTGGAGGAGGCAAATAAAACCAAGGACGAAGAATTGCAAAAGCTTGCCAAGTCGAAGAATGTCGGCGAGATGCAAAGGCA ACTAAAAAAGAAGGAAGGTGAATTAGTGATGCTTAAGAAGAAGAAGGACGAGGAGGTGGAGGCGAAAGAACAGAGGATAGACGAGCTAGAAAAGCAGAAC GAGGCTCTGGAGGAGGCTAATAAAACCAAGGATGAGGAGTTACAAAAGCTAGCCAAGTCCAAGAATACCAATGAGCTACAGAGACAATTGAAGAAGAAAG ACGACCAATTACAGATGCTGAAAAAGAAGAAGGACGAGGAGGACGAGGCGAAAGAAAAAAGGATAGAAGAGCTACAGAAGCTGAATGAGGAATTAGAAGA AGGAAATAAAGTAAAAGAGGAGGAATTGCAAAAGCTAGCCAAGTCGAAGAACATGGGCGAGATGCAGAGACAATTGAAAAAGAAAAATGATGAGTTGCAG TTGTTGAAGAAGAAGAAGGACGAGGAGGAAGAGGTTAGAGTACAAAGGATAGACGAGCTAGAAAAGCAGAATGAGAACTTGGAGGAAGCGAATAGAGCAA AGGATGACGAATTGCGGAAGCTAGCCAAATCGACCCCTTTGTAA
AA sequence Show only first row Show all	>Lus10019691 pacid=23139276 polypeptide=Lus10019691 locus=Lus10019691.g ID=Lus10019691.BGIv1.0 annot-version=v1.0 MAPFDFKLEIHFVGSSDGTSLQVYELTKSPTHFSSIQKADWKKVATINPKQDDDDDDGVYGGLLFFDGHGRIDEREALTMLAQHLKQLRLLVSPEGYCFQ QVSEFGVYSDFGIHYVRLNDLFSWPRCGVELVTINSWTRLELKYSKGGHLPKYHNNPTSSKPISCGGACKAKHAELERLVKEKDKELRMFKMKKDNDDEE KAKEQRIDELEKLNDALEEANKTKDEELQKLAKSKNVGEMQRQLKKKEGELVMLKKKKDEEVEAKEQRIDELEKLNDALEEANKTKDEELQKLAKSKNVG EMQRQLKKKEGELVMLKKKKDEEVEAKEQRIDELEKLNDALEEANKTKDEELQKLAKSKNVGEMQRQLKKKEGELVMLKKKKDEEVEAKEQRIDELEKQN EALEEANKTKDEELQKLAKSKNTNELQRQLKKKDDQLQMLKKKKDEEDEAKEKRIEELQKLNEELEEGNKVKEEELQKLAKSKNMGEMQRQLKKKNDELQ LLKKKKDEEEEVRVQRIDELEKQNENLEEANRAKDDELRKLAKSTPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019691 [exp]	0	1
					Lus10019690 [exp]	1.0	0.9887
AT2G23560		ATMES7	ARABIDOPSIS THALIANA METHYL ES...		Lus10000840 [exp]	3.7	0.8380
AT5G50200		WR3, ATNRT3.1, ...	WOUND-RESPONSIVE 3, NITRATE TR...		Lus10041950 [exp]	7.1	0.8737
AT3G29034			unknown protein		Lus10033010 [exp]	7.7	0.8875
					Lus10020249 [exp]	14.7	0.8621
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10000022 [exp]	17.5	0.7775
AT4G23340			2-oxoglutarate (2OG) and Fe(II...		Lus10009663 [exp]	18.0	0.8666
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10020968 [exp]	18.5	0.8426
AT1G61260			Protein of unknown function (D...		Lus10020090 [exp]	21.9	0.8403
AT3G02645			Plant protein of unknown funct...		Lus10016396 [exp]	22.4	0.8266

Compare expression of checked genes

Lus10019691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.