Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05370 81 / 1e-18 AtRLP31 receptor like protein 31 (.1) AT3G05360 77 / 3e-17 AtRLP30 receptor like protein 30 (.1) AT4G13820 74 / 3e-16 Leucine-rich repeat (LRR) family protein (.1) AT1G45616 74 / 6e-16 AtRLP6 receptor like protein 6 (.1) AT4G13920 73 / 8e-16 AtRLP50 receptor like protein 50 (.1) AT2G34930 73 / 1e-15 disease resistance family protein / LRR family protein (.1) AT1G71390 73 / 1e-15 AtRLP11 receptor like protein 11 (.1) AT1G47890 72 / 3e-15 AtRLP7 receptor like protein 7 (.1) AT4G13880 71 / 5e-15 AtRLP48 receptor like protein 48 (.1) AT3G23120 71 / 8e-15 AtRLP38 receptor like protein 38 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016401 [exp] 191 / 1e-61 AT1G71390 87 / 6e-19 receptor like protein 11 (.1) Lus10006824 [exp] 167 / 6e-50 AT3G23110 185 / 2e-50 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10042239 [exp] 161 / 1e-46 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10004310 [exp] 156 / 8e-45 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10004313 [exp] 152 / 2e-43 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10026415 [exp] 140 / 4e-39 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10009330 [exp] 135 / 1e-37 AT1G71400 245 / 2e-69 receptor like protein 12 (.1) Lus10003389 [exp] 135 / 1e-37 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10006825 [exp] 130 / 7e-36 AT1G47890 377 / 6e-114 receptor like protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120466 [exp] 125 / 3e-37 AT1G47890 73 / 4e-15 receptor like protein 7 (.1) Potri.016G120600 [exp] 132 / 3e-36 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.001G128400 [exp] 96 / 8e-24 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.016G126900 [exp] 90 / 1e-21 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.016G127101 [exp] 87 / 2e-20 AT1G47890 580 / 0.0 receptor like protein 7 (.1) Potri.016G127000 [exp] 84 / 1e-19 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.011G055000 [exp] 83 / 3e-19 AT1G45616 456 / 3e-145 receptor like protein 6 (.1) Potri.001G389100 [exp] 82 / 5e-19 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.012G026900 [exp] 82 / 6e-19 AT3G25010 315 / 2e-93 receptor like protein 41 (.1) Potri.012G013435 [exp] 82 / 8e-19 AT3G11080 367 / 6e-112 receptor like protein 35 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019692 pacid=23139187 polypeptide=Lus10019692 locus=Lus10019692.g ID=Lus10019692.BGIv1.0 annot-version=v1.0 ATGGTTGATATCGTTATTGGTACCTCTTCTTCCCATACTAATGGGCAGCAGAAGTGCTCTGGCCGATGCCTGGAAGACCAGCGATCCTTGCTGCTCCAGT TCAAACATAGCCTCACTTTCGACCAATCATTATCAGGAAAGCTGGCAAGGTGGAATGCAAGCGCTGACTGTTGCCAGTGGCCTGGCATAAGTTGTGATCC CGGTGGCCTCGGTCACGTTACCGGCCTCAACTTGAGCGATGGATACATCACCGGAGGCGGAGGACTAGACACCTCCTCAGCTCTCTTCAGTCTTCGGCAC CTTGAGGACCTGAATTTGTCCGGAAACTACTTCAATACCAATTTTCCGGCTGCACTTGCCAACCTCACCAATTTGAGGTATCTGGACTTATCTTATGCTG GCTTCTCCGGGCAATGCCCGCTTCCATCTCTCAGTTGA
AA sequence Show only first row Show all	>Lus10019692 pacid=23139187 polypeptide=Lus10019692 locus=Lus10019692.g ID=Lus10019692.BGIv1.0 annot-version=v1.0 MVDIVIGTSSSHTNGQQKCSGRCLEDQRSLLLQFKHSLTFDQSLSGKLARWNASADCCQWPGISCDPGGLGHVTGLNLSDGYITGGGGLDTSSALFSLRH LEDLNLSGNYFNTNFPAALANLTNLRYLDLSYAGFSGQCPLPSLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05370		AtRLP31	receptor like protein 31 (.1)		Lus10019692 [exp]	0	1
					Lus10033476 [exp]	1.4	0.9284
AT5G10250		DOT3	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10026046 [exp]	3.2	0.8884
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10023783 [exp]	3.7	0.8648
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031176 [exp]	4.2	0.8839
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10020877 [exp]	4.5	0.8708
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031175 [exp]	5.5	0.8700
AT2G34090		MEE18	maternal effect embryo arrest ...		Lus10000989 [exp]	6.6	0.8818
AT4G21510			F-box family protein (.1)		Lus10022370 [exp]	8.4	0.8434
AT1G09030	CCAAT	NF-YB4	"nuclear factor Y, subunit B4"...		Lus10004493 [exp]	8.7	0.7940
					Lus10020900 [exp]	8.8	0.8394

Compare expression of checked genes

Lus10019692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.