Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33050 307 / 3e-94 AtRLP26 receptor like protein 26 (.1) AT2G33060 302 / 4e-92 AtRLP27 receptor like protein 27 (.1) AT2G32660 295 / 8e-92 AtRLP22 receptor like protein 22 (.1) AT4G13810 297 / 6e-91 AtRLP47 receptor like protein 47 (.1.2) AT1G47890 296 / 2e-88 AtRLP7 receptor like protein 7 (.1) AT2G33020 290 / 3e-87 AtRLP24 receptor like protein 24 (.1) AT1G45616 292 / 4e-87 AtRLP6 receptor like protein 6 (.1) AT3G05660 290 / 4e-87 AtRLP33 receptor like protein 33 (.1) AT3G11010 276 / 9e-82 AtRLP34 receptor like protein 34 (.1) AT5G25910 274 / 1e-81 AtRLP52 receptor like protein 52 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016402 [exp] 1073 / 0 AT1G47890 313 / 4e-94 receptor like protein 7 (.1) Lus10042239 [exp] 729 / 0 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10026415 [exp] 727 / 0 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10006825 [exp] 664 / 0 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10003389 [exp] 650 / 0 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10004310 [exp] 627 / 0 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10004313 [exp] 603 / 0 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10003387 [exp] 466 / 6e-152 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10002214 [exp] 427 / 2e-143 AT3G05660 293 / 2e-89 receptor like protein 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120532 [exp] 577 / 0 AT1G45616 325 / 9e-98 receptor like protein 6 (.1) Potri.016G120600 [exp] 553 / 0 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.001G128400 [exp] 400 / 6e-127 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.001G437700 [exp] 359 / 6e-112 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.016G126900 [exp] 348 / 5e-108 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.011G021400 [exp] 338 / 6e-104 AT3G11080 375 / 2e-114 receptor like protein 35 (.1) Potri.016G127101 [exp] 325 / 2e-99 AT1G47890 580 / 0.0 receptor like protein 7 (.1) Potri.001G389100 [exp] 323 / 2e-98 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.016G127000 [exp] 318 / 1e-96 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.012G027600 [exp] 320 / 2e-96 AT1G71400 395 / 1e-121 receptor like protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10019693 pacid=23139271 polypeptide=Lus10019693 locus=Lus10019693.g ID=Lus10019693.BGIv1.0 annot-version=v1.0 ATGCTTACTTACATTAACCTCACGGACAATGCCTTCAACGGAAGCATCCCACCATCTTTATTCGCCATTCCATCCTTGCAGTTTATCAGCCTATCCTACA ACCAATTTCAAGGTCAGGCTCCAGAGTACCCAAATGTTACTTCTTCGGCTCTTGAAACATTAGGTTTGAGTCACAACAATTTGGAAGGCTCAATCCCTCG TTCCCATTTTGAAATTCGTACACTTGAAACTCTTCCACTTGGATCTAATAGATTCACTGGAATCGTACAATTAACTTGGATTCAAAAGCTCCAAAATCTA CACTACCTTTTTCTTTCAGACAACAACCTGACAGTGGATGCAAGCGACACCAACTTGTCCACCTTGTCCAAGTTTCCCCAATTCTCCACATTGAAATTGG CATCATGCAATCTGAGAAAATTTCCAATGTTAGGCAACCAATCAAGGTTAGAAGTTCTAGATCTTTCGAACAACTTTATTGATGGGGTAATACCTCGTTG GATTCTAGAATCATCTACTGTACAAAATCTCAATCTTTCGCATAACAATCTGATGGGCTTTGAGATACAGCATATTTATCTTCCTCATCTTGAATCCTTG GACATACATGACAACAAACTCCATGGAGACATTCCAATCATTTTATCAACGTTGTCCTACGTAGACTACTCCAACAATCTTTGCAATGGTTCCATTCCGG CTGAAATCAGAAATTACCTTTCCTTTCAATTCTTCTCAGTATCAAATAATAGCCTCGAAGGAGCGATTCCATTGAGTATTTGCAATGCTTCAGATGTTCA AGTCCTTGATTTGTCAAACAACCATTTCAGTGGTACAATTCCGGAATGTTTGATGAGGAACTTCTGGCTTATGGTTTTAGATTTGAAGGGCAATAAGCTC AGTGGACACATACCTGACGTATTCCAAGCTTCATGTTGGCTGCAAACTCTTGATCTCAGTAACAACCAGTTGCAAGGAAAAGTTCCACAGTCTTTGGACA ACTGTACAATATTAGCAGTCTTGGACCTTGGGAACAACAAAATGTCTGATGTCTTTCCCTGCTTCTTGGGAAACAAATCTAGCTTGAGTGTTCTTATCCT GAGGAACAACCTTTTCCATGGGAGCATGTCCTGTCACGATGATCTTCCTGGTGCTTGGCCAAAGCTTCAAGTTGTAGATTTAGCTTCCAACCATTTTTCG GGAAACTATGAAAAATCCATAACTGTCATCAACAAGGGTGTCAAGATGGTACTTGTCAAGATAGTCCTGACAATGTTCAGATCTATTGATTTCTCAAGCA ATAATTTTCATGGGCCATTACCAGAAGTGATAGGAGAATTTGGTGCTCTTGTTGCCCTCAATTTCTCCCACAATGCTTTCATGGGCCAGATCCCATCAAT GTTTGGCCGTTTATCAAACCTAGAGTCTCTGGATCTCTCCCACAACAAGCTCAGTGGACAGATCCCAACAGAGTTAGCAAGCCCGACTTTCCTCTCACTC CTGAATCTGTCAGAGAATCATCTGGTTGGAAAAATTCCGACGGATAGCCAGTTCCACACATTTGACAACACTTCCTTTGAAGGTAATCCATATTTGTGCG GATCTCCTTTGTCCAAAACTTGCAATCCAATTCATCAAGAAGCTACTGCCAGCCATGATGATAAATCCACTACAAGAATCAACTGGGACATCCTAAGCAA AGCATTTGGATATATTTTCGGATTAGGTCTTGTCATGTTACCAGCTGCACTATGGCCGAGCTTTCGAATTTGGTACTGGCCAAAGATTGATTCTTTACTC CTATGGATGTTCCCAAAGTTATATGTGAAGGGCTGGAACAATCGCCTCAGGACAAGGCAAGGCCAGCGGCGTAGCAAGAAAGCAATCACTAGTTAG
AA sequence Show only first row Show all	>Lus10019693 pacid=23139271 polypeptide=Lus10019693 locus=Lus10019693.g ID=Lus10019693.BGIv1.0 annot-version=v1.0 MLTYINLTDNAFNGSIPPSLFAIPSLQFISLSYNQFQGQAPEYPNVTSSALETLGLSHNNLEGSIPRSHFEIRTLETLPLGSNRFTGIVQLTWIQKLQNL HYLFLSDNNLTVDASDTNLSTLSKFPQFSTLKLASCNLRKFPMLGNQSRLEVLDLSNNFIDGVIPRWILESSTVQNLNLSHNNLMGFEIQHIYLPHLESL DIHDNKLHGDIPIILSTLSYVDYSNNLCNGSIPAEIRNYLSFQFFSVSNNSLEGAIPLSICNASDVQVLDLSNNHFSGTIPECLMRNFWLMVLDLKGNKL SGHIPDVFQASCWLQTLDLSNNQLQGKVPQSLDNCTILAVLDLGNNKMSDVFPCFLGNKSSLSVLILRNNLFHGSMSCHDDLPGAWPKLQVVDLASNHFS GNYEKSITVINKGVKMVLVKIVLTMFRSIDFSSNNFHGPLPEVIGEFGALVALNFSHNAFMGQIPSMFGRLSNLESLDLSHNKLSGQIPTELASPTFLSL LNLSENHLVGKIPTDSQFHTFDNTSFEGNPYLCGSPLSKTCNPIHQEATASHDDKSTTRINWDILSKAFGYIFGLGLVMLPAALWPSFRIWYWPKIDSLL LWMFPKLYVKGWNNRLRTRQGQRRSKKAITS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33050		AtRLP26	receptor like protein 26 (.1)		Lus10019693 [exp]	0	1
AT5G27530			Pectin lyase-like superfamily ...		Lus10036205 [exp]	1.7	0.8724
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10034565 [exp]	2.2	0.8829
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10040583 [exp]	2.4	0.8761
AT2G46580			Pyridoxamine 5'-phosphate oxid...		Lus10030234 [exp]	4.8	0.8091
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10040569 [exp]	4.9	0.8638
AT5G65550			UDP-Glycosyltransferase superf...		Lus10008956 [exp]	4.9	0.8680
AT5G16020		GEX3	gamete-expressed 3 (.1)		Lus10034090 [exp]	5.5	0.8646
AT1G66930			Protein kinase superfamily pro...		Lus10008362 [exp]	6.5	0.8645
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042903 [exp]	7.5	0.8640
AT1G11070			unknown protein		Lus10038307 [exp]	7.9	0.8563

Compare expression of checked genes

Lus10019693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.