Plant FIBer expression Database

Lus10019695 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G08500 875 / 0 Transmembrane CLPTM1 family protein (.1)
AT5G23575 860 / 0 Transmembrane CLPTM1 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016422
[exp]
1069 / 0 AT5G08500 905 / 0.0 Transmembrane CLPTM1 family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G134500
[exp]
954 / 0 AT5G08500 873 / 0.0 Transmembrane CLPTM1 family protein (.1)
Potri.T045800
[exp]
951 / 0 AT5G08500 919 / 0.0 Transmembrane CLPTM1 family protein (.1)
Potri.018G137500
[exp]
949 / 0 AT5G08500 917 / 0.0 Transmembrane CLPTM1 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05602 CLPTM1 Cleft lip and palate transmembrane protein 1 (CLPTM1)
Representative CDS sequence
>Lus10019695 pacid=23139264 polypeptide=Lus10019695 locus=Lus10019695.g ID=Lus10019695.BGIv1.0 annot-version=v1.0
ATGGCGCCGCCGGCAGCGCCTGCTGCTGCGATACAGCAGCAGGGACAGCCGCCGCAAGGACGGCAGCAACAGCAAGCAGCTGGTGGTATGGGGCAGACGA
TTACTGGGATCATTAGGATTGCTGTGTTTTGGTACTTCGCTTCCAAGTTCTTCTCTCCCGCCAAGAAACCCACCTCCGACCCTGGTCTTCTCACCTCCAA
TCTCTTCCAGAAGGGCGAGCTTATGGATATGTGGTTCTATGTGTCTGAGAGTGAGAAGTTCGATGACTTCAGCAATGAAGGTGCACTTATTTGGCATGAG
ACTAACATACCTTATGCCGTTTGGGGACCCGAAAGTACTAGGTCTCTTTCTATGAAGTATTATCCCTCGGAGGCATTGAAGCACAACGGCAGTCTTTATG
CCCATGTTTTCCTTGCACGTTCTGGGTATCCACCAGACCCCAAAGATCCAGAATATCAGCCTCTTGCTGCCTTTGGAAGGACTCATCCCATTGTGGTTTA
CCTACCAAAGTCGAAATCTGATAAGAAGAAGAGTCTGCTGGATGCCAAAGGTGGCGAGGAAAGTGAATCACTTACTCAGGTGGCTGATGATGCTGAGTCT
GATCCTAAAGATGAAGGTCCTCCAGAATGGATTTCCTATTGGAAACCAAATGTTACCATAAACCTGATTGAAGACTTCTCTAGATATTCACAAAATGCAG
TGCCACCAAACATTGCTCCTTACTTGAACTTTGAGCCTAGCACTGGGAATTACTATCCCACCATATTCTTCAACGAATTTTGGTTGCTCAGGGATAAGTT
GATAGCATTGAATGATACGGTGACAGAATTGGCACTTAATTTGGAGGTTGGTCCAATGAGCATGACGAAGTGGCAACTGTTTCTTCAGATTGATCAGTCA
TTCCAGATCCATAGAAGTTATGGAAGTATGCTTGAAGGTGAAGCTGATGAATTGAAGAGGGTGTTCCTAGAAGGAAATCCTTACCTTCTTGGTATCACAA
TGGTTGTTTCCTTGTTCCATTCATTGTTCGATTTCCTGGCCTTCAAGAATGATATACAATTTTGGAATAAAAACAAGTCTATGGAAGGGTTGTCTGCAAA
ATCAGTTGTTGTGAACTTCATATCACAGCTCATCGTGTTTCTCTATCTACTTGACAACGACACCTCATGGATGATACTTGCAAGCTCTGGTGTTGGTGTA
TGCATTGAGTTTTGGAAAATCGGTAAAGCCATGCACATTGAGGTCGATAGAAGTGGCAGGATACCAATGCTGAGATTCCGAGACCGCGAGTCTTACGCTG
GAAACAAGACGAAAGAATACGATGACATGGCGATGAAGTACCTGTCATACGTGATAATGTTCCTTGCTGCATGCTTTGCTATTTATTCACTAAAGTATGA
GCGTCACAAGAGCTGGTACTCCTGGATTCTCTCGTCTTTAACCAGCTGCGTCTACATGTTCGGTTTCATCATGATGTGCCCTCAGCTGTTCATAAACTAC
AAACTGAAGTCCGTGGCTCATATGCCTTGGAGACAAATGACGTACAAGTTCCTCAACACCATCATTGACGATCTGTTTGCCTTCGTCATTAAAATGCCTA
TCCTACATAGACTTTCAGTTTTCCGTGATGATATCATATTTCTGATCTATCTATACCAGAGGTGGGTGTACCCGGTCGACAAGAAGCGCGTGAACGAGTT
TGGCTTCGGAGGCGAGGAAGAACAGGCCTCGATTACAGCTGGTGATGCCGCCGCTGCTGTAGCAACAGTGGAGAAAGAGGAAGAGAAGAAGACTAAGTAG
AA sequence
>Lus10019695 pacid=23139264 polypeptide=Lus10019695 locus=Lus10019695.g ID=Lus10019695.BGIv1.0 annot-version=v1.0
MAPPAAPAAAIQQQGQPPQGRQQQQAAGGMGQTITGIIRIAVFWYFASKFFSPAKKPTSDPGLLTSNLFQKGELMDMWFYVSESEKFDDFSNEGALIWHE
TNIPYAVWGPESTRSLSMKYYPSEALKHNGSLYAHVFLARSGYPPDPKDPEYQPLAAFGRTHPIVVYLPKSKSDKKKSLLDAKGGEESESLTQVADDAES
DPKDEGPPEWISYWKPNVTINLIEDFSRYSQNAVPPNIAPYLNFEPSTGNYYPTIFFNEFWLLRDKLIALNDTVTELALNLEVGPMSMTKWQLFLQIDQS
FQIHRSYGSMLEGEADELKRVFLEGNPYLLGITMVVSLFHSLFDFLAFKNDIQFWNKNKSMEGLSAKSVVVNFISQLIVFLYLLDNDTSWMILASSGVGV
CIEFWKIGKAMHIEVDRSGRIPMLRFRDRESYAGNKTKEYDDMAMKYLSYVIMFLAACFAIYSLKYERHKSWYSWILSSLTSCVYMFGFIMMCPQLFINY
KLKSVAHMPWRQMTYKFLNTIIDDLFAFVIKMPILHRLSVFRDDIIFLIYLYQRWVYPVDKKRVNEFGFGGEEEQASITAGDAAAAVATVEKEEEKKTK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G08500 Transmembrane CLPTM1 family pr... Lus10019695
[exp]
0 1
AT2G26100 Galactosyltransferase family p... Lus10023955
[exp]
2.6 0.8974
AT3G09090 DEX1 DEFECTIVE IN EXINE FORMATION 1... Lus10035533
[exp]
5.1 0.8885
AT4G32350 Regulator of Vps4 activity in ... Lus10034905
[exp]
8.4 0.8493
AT4G27630 GTG2 GPCR-type G protein 2 (.1.2.3) Lus10020351
[exp]
8.9 0.8418
AT1G04910 O-fucosyltransferase family pr... Lus10017105
[exp]
11.5 0.8441
AT4G38200 SEC7-like guanine nucleotide e... Lus10001620
[exp]
14.0 0.8845
AT4G01810 Sec23/Sec24 protein transport ... Lus10007190
[exp]
14.8 0.8535
AT4G38200 SEC7-like guanine nucleotide e... Lus10022983
[exp]
15.7 0.8865
AT4G26450 WIP1 unknown protein Lus10027096
[exp]
15.9 0.8589
AT1G04860 ATUBP2, UBP2 ubiquitin-specific protease 2 ... Lus10007120
[exp]
18.5 0.8469

Lus10019695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.