Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38420 182 / 4e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 134 / 1e-35 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G05670 129 / 1e-33 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT4G11690 123 / 8e-32 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G01110 123 / 2e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62680 122 / 2e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 122 / 3e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G64580 121 / 3e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G06580 120 / 5e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63330 118 / 5e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001256 [exp] 469 / 2e-165 AT2G38420 403 / 8e-137 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002476 [exp] 461 / 5e-163 AT2G38420 363 / 4e-122 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 132 / 2e-34 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 129 / 2e-33 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027267 [exp] 127 / 1e-32 AT1G74580 813 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 126 / 2e-32 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10003424 [exp] 117 / 3e-29 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10016727 [exp] 116 / 4e-29 AT5G61990 345 / 2e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 115 / 1e-28 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G106400 [exp] 256 / 2e-82 AT2G38420 428 / 1e-146 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 131 / 3e-34 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G047000 [exp] 129 / 1e-33 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.002G109500 [exp] 127 / 5e-33 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G046100 [exp] 127 / 5e-33 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 126 / 1e-32 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G014500 [exp] 126 / 2e-32 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G035700 [exp] 125 / 2e-32 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.018G038300 [exp] 125 / 2e-32 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G234500 [exp] 125 / 3e-32 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10019697 pacid=23139303 polypeptide=Lus10019697 locus=Lus10019697.g ID=Lus10019697.BGIv1.0 annot-version=v1.0 ATGTTTTTAGTGCCAAATGTAATTGGATTCTTCGGGGAACTGAGAAAGCTAGGACTTGTTCCAGGGTTGATATATTACACCAATCTCATTAGGTTCTTGG TTAGAGAAGGAGACGGAGTTGAAGCTATGAATCTTCTGAATCAGGTGAAATCAGACGGGATCAAGCCTGATATAGTCTGCTACAACTTGGTTCTGAAAGG GTTAATCTTCATCCAGGAGTTTGAATTAGCAGATAACCTTTTTGACGAATTGCTTCTGTACGGATTGGTGCCTGATATTCGTACTTACAATATCTACATA GACGGATTGTGCAAGCAAGCCAAGATGGAAAGTGGAATCAAGATGGTTGAACCAATGCAGCAACTGGGATGCAAGCCTGATGTCAACACTTACAATACAT TAGTAGCTGCACTGAATAAAGATGGAAACTTTGGTGGTGCAAGGGAGCTGGTGAGGGAGATGGCCAAGAAGGGAATCAGATGGAATATAGAGACGTATGA GATTGTGATCGATCTGTTGAGTAGGTGTGGAGAAATGGCTAAAGCTTATGCTTTGGTGGAGGAAGGATTGCAGAAAGAGCTGGTGGGTGATGTTGTGGCT GCTGAGAATGTGGTTTGTGGGTTGTGTAGAAGGGGAATGATGGATAATGCTGTGGGATTGATTGTTAAAATGGTGGAGAGGAATGTTGCTCCTGGAGCTG GAGCTTGGGAAGCGGTTCTTTTGGGGTTGGGGTTCAAGGTTGAATGTTCAGGAACTAGGTTTGGTGGATTGTTGCTGGATTTGCAAAGTGTAGACACAGT TCAGTATGAGAGATTGATCCAAATTTGTATTCACATAAAAAGAATGGTAGTTAGTTAA
AA sequence Show only first row Show all	>Lus10019697 pacid=23139303 polypeptide=Lus10019697 locus=Lus10019697.g ID=Lus10019697.BGIv1.0 annot-version=v1.0 MFLVPNVIGFFGELRKLGLVPGLIYYTNLIRFLVREGDGVEAMNLLNQVKSDGIKPDIVCYNLVLKGLIFIQEFELADNLFDELLLYGLVPDIRTYNIYI DGLCKQAKMESGIKMVEPMQQLGCKPDVNTYNTLVAALNKDGNFGGARELVREMAKKGIRWNIETYEIVIDLLSRCGEMAKAYALVEEGLQKELVGDVVA AENVVCGLCRRGMMDNAVGLIVKMVERNVAPGAGAWEAVLLGLGFKVECSGTRFGGLLLDLQSVDTVQYERLIQICIHIKRMVVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38420			Pentatricopeptide repeat (PPR)...		Lus10019697 [exp]	0	1
AT1G22540			Major facilitator superfamily ...		Lus10001287 [exp]	4.7	0.8152
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Lus10033866 [exp]	9.3	0.8054
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10028942 [exp]	14.8	0.7970
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10008669 [exp]	17.9	0.8133
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10016941 [exp]	18.4	0.8012
					Lus10011631 [exp]	25.9	0.7657
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028863 [exp]	26.0	0.7924
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10004841 [exp]	32.1	0.7826
AT5G10530			Concanavalin A-like lectin pro...		Lus10020447 [exp]	34.9	0.7758
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10009833 [exp]	35.7	0.7912

Compare expression of checked genes

Lus10019697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.