Plant FIBer expression Database

Lus10019704 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G52105 79 / 2e-21 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016415
[exp]
132 / 1e-42 AT3G52105 81 / 3e-22 unknown protein
Lus10029521
[exp]
109 / 2e-33 AT3G52105 85 / 8e-24 unknown protein
Lus10012208
[exp]
76 / 3e-20 AT3G52105 70 / 5e-18 unknown protein
Lus10042363
[exp]
75 / 9e-20 AT3G52105 75 / 6e-20 unknown protein
Lus10011321
[exp]
74 / 2e-19 AT3G52105 72 / 1e-18 unknown protein
Lus10026305
[exp]
74 / 4e-17 AT3G57570 229 / 2e-65 ARM repeat superfamily protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G061800
[exp]
95 / 1e-27 AT3G52105 90 / 1e-25 unknown protein
Potri.001G267501
[exp]
88 / 5e-25 AT3G52105 87 / 9e-25 unknown protein
Potri.016G053400
[exp]
84 / 5e-23 AT3G52105 76 / 9e-20 unknown protein
Potri.006G054200
[exp]
74 / 2e-19 AT3G52105 67 / 2e-16 unknown protein
PFAM info
Representative CDS sequence
>Lus10019704 pacid=23139289 polypeptide=Lus10019704 locus=Lus10019704.g ID=Lus10019704.BGIv1.0 annot-version=v1.0
ATGGCGATGCAGCTATTCTTCACGGTGGCTTTCTCAGCCGTGCCTTTGACTCTGTACATTCCGCCGGTAAGGAGCTTGAACATGTTTGTGGAGACGATGG
AGGAAGCCGTCAGAGAATCCAGGCTTTACTCAGTCAGGTATTATCCCGCAGCCAGGCAAGTCTGGTCAAGGCTCTGGACCAGATTCCTCCGCCATTTCCC
GTTCCTTTGA
AA sequence
>Lus10019704 pacid=23139289 polypeptide=Lus10019704 locus=Lus10019704.g ID=Lus10019704.BGIv1.0 annot-version=v1.0
MAMQLFFTVAFSAVPLTLYIPPVRSLNMFVETMEEAVRESRLYSVRYYPAARQVWSRLWTRFLRHFPFL

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G52105 unknown protein Lus10019704
[exp]
0 1
AT2G21620 RD2 Adenine nucleotide alpha hydro... Lus10026346
[exp]
3.9 0.8627
AT2G39650 Protein of unknown function (D... Lus10023412
[exp]
4.8 0.8760
AT2G27450 CPA, ATNLP1, NL... nitrilase-like protein 1 (.1.2... Lus10020627
[exp]
10.0 0.8601
AT5G53130 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNE... Lus10038815
[exp]
10.0 0.8432
AT2G18210 unknown protein Lus10025998
[exp]
13.9 0.8070
AT5G53130 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNE... Lus10014925
[exp]
15.0 0.8498
AT2G16430 ATPAP10, PAP10 purple acid phosphatase 10 (.1... Lus10017485
[exp]
15.4 0.8689
AT5G08790 NAC ATAF2, ANAC081 Arabidopsis NAC domain contain... Lus10033493
[exp]
18.6 0.8144
AT1G79910 Regulator of Vps4 activity in ... Lus10037536
[exp]
20.2 0.8213
AT1G11340 S-locus lectin protein kinase ... Lus10007604
[exp]
24.4 0.8610

Lus10019704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.