Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13450 238 / 5e-79 ATP5 delta subunit of Mt ATP synthase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016414 [exp] 455 / 1e-164 AT5G13450 262 / 9e-89 delta subunit of Mt ATP synthase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G061600 [exp] 288 / 7e-99 AT5G13450 219 / 6e-72 delta subunit of Mt ATP synthase (.1.2) Potri.019G087300 [exp] 42 / 0.0001 AT4G09650 227 / 9e-75 PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0255 [flax] [poplar] ATP_synthase PF00213 [flax] [poplar] OSCP ATP synthase delta (OSCP) subunit
Representative CDS sequence Show only first row Show all	>Lus10019706 pacid=23139280 polypeptide=Lus10019706 locus=Lus10019706.g ID=Lus10019706.BGIv1.0 annot-version=v1.0 ATGGCTGGCCGTATCAGATCAGCTCTTCCTCTAATCAACAGGATCGCCAGATCGGATTCCTCTCTCGCTCCTCAGAGCCGCGCAATCCTCTCCCCGACGT TCAATTCATCATCCGAGTCAAGGAATTATGCCACCGCAGCTGCACCACCGAAGGAGGTGAAAATTAAGGTGCCTATTGCTTTGTACGGAGGAGCTGCGAA TTATGCCTCTGCTCTATTCATTGCAGCCAAAAAGGCTAATACTCTAGATAAAGTGGAGGCTGAACTTCTTGACCTTGTTCAAGCTTTGGAGAAAAGTCCT ATCTTCTCTCAGTTCACCAAGGATATGTCAGTGCCTGCTGATACAAGAGTTAAGGCCATTAATGATATTACTGAACAAGCCAAATTCTGTGAAACTACCA AGACCTTCTTGGTTGTCCTTGCTCAGAACGGAAGGTTGAGAAATGTTGATACCATAGCCAAGAAGTTTGCACAGCTGACAATGGCAGATAAAGGAATTGT GAAGGCTACCGTGACAACAGTTGAGCCGCTGCCTGCTTCTGAGGAGAAAGAACTGAAGGAGATCCTGCAGGAGATTATCGGACAAGGAAAGAAGGTGACA CTTGAGCAGAAGATTGATGCTAGCATCCTCGGAGGCCTCGTGGTCGAGTTCTCCCAGAAGGTGTTCGACATGTCCATCAAGACAAGGGCACAACAGATGG AGAGGTCTCTCCGGGAACCAATCAACTTTAGTTCGGCTTAG
AA sequence Show only first row Show all	>Lus10019706 pacid=23139280 polypeptide=Lus10019706 locus=Lus10019706.g ID=Lus10019706.BGIv1.0 annot-version=v1.0 MAGRIRSALPLINRIARSDSSLAPQSRAILSPTFNSSSESRNYATAAAPPKEVKIKVPIALYGGAANYASALFIAAKKANTLDKVEAELLDLVQALEKSP IFSQFTKDMSVPADTRVKAINDITEQAKFCETTKTFLVVLAQNGRLRNVDTIAKKFAQLTMADKGIVKATVTTVEPLPASEEKELKEILQEIIGQGKKVT LEQKIDASILGGLVVEFSQKVFDMSIKTRAQQMERSLREPINFSSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Lus10019706 [exp]	0	1
AT4G37830			cytochrome c oxidase-related (...		Lus10019250 [exp]	1.4	0.9523
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10019137 [exp]	1.7	0.9470
AT5G47030			ATPase, F1 complex, delta/epsi...		Lus10001082 [exp]	2.4	0.9479
AT2G33040		ATP3	gamma subunit of Mt ATP syntha...		Lus10007534 [exp]	2.6	0.9332
AT2G42210		ATOEP16-3	Mitochondrial import inner mem...		Lus10012024 [exp]	3.5	0.9406
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Lus10012411 [exp]	3.5	0.9334
AT4G10040		CYTC-2	cytochrome c-2 (.1)		Lus10028892 [exp]	5.5	0.9371
AT3G59760		ATCS-C, OASC	ARABIDOPSIS THALIANA CYSTEINSY...		Lus10025589 [exp]	7.1	0.9031
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10027539 [exp]	7.7	0.9287
AT5G27430			Signal peptidase subunit (.1)		Lus10004463 [exp]	8.8	0.9248

Compare expression of checked genes

Lus10019706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.