Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41900 613 / 0 C3HZnF OXS2 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) AT5G12850 395 / 1e-126 C3HZnF PEI1 CCCH-type zinc finger protein with ARM repeat domain (.1) AT5G58620 274 / 5e-82 C3HZnF zinc finger (CCCH-type) family protein (.1) AT2G40140 237 / 2e-68 C3HZnF ATSZF2, CZF1, ZFAR1 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) AT3G55980 235 / 6e-68 C3HZnF ATSZF1 salt-inducible zinc finger 1 (.1) AT2G25900 193 / 2e-55 C3HZnF ATTZF1, ATCTH A. THALIANA TANDEM ZINC FINGER PROTEIN 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT2G19810 192 / 1e-54 C3HZnF AtOZF1 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) AT4G29190 190 / 7e-54 C3HZnF AtOZF2 Arabidopsis thaliana oxidation-related zinc finger 2, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G07500 186 / 9e-54 C3HZnF PEI1 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G03790 176 / 2e-48 C3HZnF SOM SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007493 [exp] 345 / 2e-108 AT2G40140 614 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10028970 [exp] 257 / 3e-75 AT2G40140 615 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10040662 [exp] 218 / 2e-63 AT5G58620 341 / 2e-112 zinc finger (CCCH-type) family protein (.1) Lus10035006 [exp] 197 / 6e-56 AT2G19810 380 / 2e-131 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10012922 [exp] 195 / 2e-55 AT2G19810 387 / 9e-134 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10017708 [exp] 180 / 6e-51 AT1G03790 252 / 7e-82 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10033665 [exp] 178 / 6e-50 AT1G03790 240 / 6e-77 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10018621 [exp] 171 / 6e-47 AT1G03790 245 / 3e-78 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10018243 [exp] 45 / 0.0001 AT5G58620 100 / 3e-24 zinc finger (CCCH-type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G266700 [exp] 766 / 0 AT2G41900 708 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.009G061000 [exp] 748 / 0 AT2G41900 672 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053800 [exp] 670 / 0 AT2G41900 817 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.016G053700 [exp] 659 / 0 AT2G41900 820 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053900 [exp] 655 / 0 AT2G41900 791 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.001G258400 [exp] 432 / 5e-141 AT5G12850 506 / 4e-171 CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.009G053500 [exp] 419 / 7e-137 AT5G12850 476 / 5e-160 CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.009G046800 [exp] 383 / 5e-122 AT5G58620 553 / 0.0 zinc finger (CCCH-type) family protein (.1) Potri.001G252600 [exp] 376 / 3e-119 AT5G58620 572 / 0.0 zinc finger (CCCH-type) family protein (.1) Potri.008G069400 [exp] 358 / 5e-113 AT2G40140 557 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10019709 pacid=23139244 polypeptide=Lus10019709 locus=Lus10019709.g ID=Lus10019709.BGIv1.0 annot-version=v1.0 ATGAAACGAGATTGGCTACAGCAGCAAGAGTTTGACAACTCCCGCTTCTACGTGGTGTCACTAATTGAAAAGAACGGCAACTACTTAATTCTTGCAGATC TGCTCACTCATACCACTTCATCTCCCTTCCGCTCTCTGCTACTGTTCTCCACTTCTGGTTTTCAGCTGTTGAAGTACGTGCCTGAAGGGTCATCAAACGC AGAGTCTACTGAATCTCCATCCACAACCAAAGCTATTTCCGATACCAAAGACATGAAACATCTAACTGTTGAAACTGACGATTGTTTTTCCAGCTTACTT GAACTTGCTGCTAACGACGACATTGAAGGGTTCCGGACCTCTGTCGAACGAGATGCTTCCTCGATTGATGAGGTGGGGTTCTGGTATAGCCGCCAGAAGG GTGCCAAGCAGATTGTTCTGGAGCACAGAACTCCTCTGATGGTTGCAGCTATCTACGGCAGTGTAGATGTGCTCGAGCTTATACTGACCAAGACTCAAGC TGATGTGAATTTCTCTTGTGGCACGGATAAGACTACTGCTCTCCATTGTGCTGCCTCTGGTGGATCCGCTAGTGCTGTTGATGTTGTTAAGATGCTGTTA TTGGCTGGTGCTGATCCGAATCTTGTCGATGCTAATGGCCATCGTCCTGTTGATGTCATCGTTGTCCCTCCAAAGCTGCAGTCTTTGAGGTTTATTCTTG AAGGGCTTCTCTCTGATGGTGGCTCTTTTGAAGGTGCTGGTACTGAACACTTTCTTAATGGAAATATTGGTGGTGAGAGAAACAACTTGAGGGTGTCGGT AATGACTTCCAGTTCCAGCTCACCAACTCATTCGTCATCACCAGGAAATGGTTCTCCACCATCTCCTTCTGTGTTAGTGTACTCTCCAATGGCATCTAAG TTCAGCGACCAGCCACTAGCGGAGAAAAAAGAGTACCCGATTGATCCGTCTCTTCCTGACATCAAGAACAGCATCTACTCAACTGATGAGTTTCGTATGT ACTCGTTCAAGGTTCGACCTTGTTCGCGAGCCTACTCGCACGACTGGACCGAGTGTCCTTTCGTACACCCGGGAGAGAATGCTCGCAGAAGGGATCCAAG GAAGTTTCACTACAGCTGTGTTCCTTGCCCTGATTTTCGCAAAGGGGCATGCAGGCGCGGGGATATGTGTGAATATGCACATGGTGTTTTCGAGTGCTGG CTTCATCCGGCTCAATATCGAACTAGGCTTTGCAAAGATGGGACTAGCTGCAACAGACGTGTATGCTTTTTTGCTCATTTACCGGAAGAGCTCAGGCCTT TGTATGTCTCTACTGGATCTGCTGTTCCTTCTCCACGCTCATCTGCGGCTAGTGTAATGGACATGGCTGCTGCTTTAAGCATGTTACCCGGTTCCCCTTC ATCAATGTCTGGTATGTCATCGCCAACTCCATTCAATCAGCAACCAATGTCGAACTCTATCAATGGTGGTGGGTGGCCACAGCCAAATGTTCCGACTCTT CATCTTCCAGGCAGCAACCTCCAGTCTAGCCGCCTGAGATCGTCCCTAAGCGCCAGAGACATTCCGCCTCATGATTTTGACTTTCTGAAAGATTTTGATG CTCAGCAGCACATTTTGAATGATCTAACTTGTTTCTCACAGTCCCGGAACAACAACTCTGCATCTTTGAATCGTTCCGGACGGCCCACATCACTAACTCC TTCAAACCTCGAGGAGCTTTTCTCCGCTGAACTTTCCTCTCCACGATATGCCGATCAAGGTGCTGCTGCTTTCTCTCCAACACACAAGTCAGCCATGCTG CATCAGTTTCAGCAGCAGCAACAGAGCATGCTTTCACCCATCAACACAAGTGTCTTCTCTCCCAAAAACGTTGACCACCCATTTCTCCAGAACTCATTCG GCGTTGGATCATCTCCTGGGAGGATGTCACCAAGAAGTATGGACCCCATCTCTCCAATGAACGGCCGCTTGTCTGCAGTTCGAGAGAGGCAACAACAGCA GCAGCAGCAGTTCCGTAGCCTCAGCTCGAGGGATCTCGGAGTGAACAATCCTCTATCTTCGGTCGTGGGATCCCCTGTTAGCTCGAGGACAAACTGGGGA TCCCCGAGCGGGAGGCTAGACTGGTCTGTTAGTGGGGAAGAGCTAGGCCGGTTAAAGAGATCCTCTTCATTCGAGAATGGTAACAACAATGGAGGAGAGG AGCCGGACCTGTCATGGGTCCAGTCTTTGGTGAAGGAGTCTCCTCCTGAGGTGATGATGAGAGACAATAAGTATGGAGGAGGACCTCCTGATTCTTCAGC TTCTGACCCCAACACGGAGATTGACTCTCTGATGGAGTCGTTGGCTTTAGCAGATGCATATTAA
AA sequence Show only first row Show all	>Lus10019709 pacid=23139244 polypeptide=Lus10019709 locus=Lus10019709.g ID=Lus10019709.BGIv1.0 annot-version=v1.0 MKRDWLQQQEFDNSRFYVVSLIEKNGNYLILADLLTHTTSSPFRSLLLFSTSGFQLLKYVPEGSSNAESTESPSTTKAISDTKDMKHLTVETDDCFSSLL ELAANDDIEGFRTSVERDASSIDEVGFWYSRQKGAKQIVLEHRTPLMVAAIYGSVDVLELILTKTQADVNFSCGTDKTTALHCAASGGSASAVDVVKMLL LAGADPNLVDANGHRPVDVIVVPPKLQSLRFILEGLLSDGGSFEGAGTEHFLNGNIGGERNNLRVSVMTSSSSSPTHSSSPGNGSPPSPSVLVYSPMASK FSDQPLAEKKEYPIDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECW LHPAQYRTRLCKDGTSCNRRVCFFAHLPEELRPLYVSTGSAVPSPRSSAASVMDMAAALSMLPGSPSSMSGMSSPTPFNQQPMSNSINGGGWPQPNVPTL HLPGSNLQSSRLRSSLSARDIPPHDFDFLKDFDAQQHILNDLTCFSQSRNNNSASLNRSGRPTSLTPSNLEELFSAELSSPRYADQGAAAFSPTHKSAML HQFQQQQQSMLSPINTSVFSPKNVDHPFLQNSFGVGSSPGRMSPRSMDPISPMNGRLSAVRERQQQQQQQFRSLSSRDLGVNNPLSSVVGSPVSSRTNWG SPSGRLDWSVSGEELGRLKRSSSFENGNNNGGEEPDLSWVQSLVKESPPEVMMRDNKYGGGPPDSSASDPNTEIDSLMESLALADAY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Lus10019709 [exp]	0	1
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10038753 [exp]	1.7	0.8619
AT3G18310			unknown protein		Lus10023992 [exp]	3.9	0.8586
AT5G43670			Sec23/Sec24 protein transport ...		Lus10022219 [exp]	5.7	0.8598
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10029784 [exp]	7.3	0.8422
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002913 [exp]	8.0	0.8331
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002014 [exp]	10.5	0.8162
AT4G02720			unknown protein		Lus10022052 [exp]	10.5	0.8428
AT4G02720			unknown protein		Lus10042601 [exp]	11.6	0.8286
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10008983 [exp]	13.0	0.8434
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Lus10025531 [exp]	13.5	0.8374

Compare expression of checked genes

Lus10019709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.