Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63520 842 / 0 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT4G19170 334 / 2e-107 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT1G30100 334 / 2e-107 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT1G78390 332 / 6e-106 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT3G14440 330 / 1e-105 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) AT3G24220 329 / 1e-105 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1) AT4G18350 314 / 7e-100 ATNCED2, NCED2 nine-cis-epoxycarotenoid dioxygenase 2 (.1) AT4G32810 79 / 3e-15 MAX4, CCD8, ATCCD8 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016410 [exp] 1088 / 0 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10029513 [exp] 913 / 0 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10035696 [exp] 340 / 1e-109 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10023673 [exp] 328 / 4e-105 AT3G24220 706 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10011750 [exp] 300 / 2e-94 AT3G24220 657 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10026185 [exp] 257 / 1e-78 AT3G14440 682 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Lus10029512 [exp] 232 / 7e-74 AT3G63520 211 / 9e-67 carotenoid cleavage dioxygenase 1 (.1) Lus10009513 [exp] 210 / 1e-60 AT3G63520 219 / 4e-64 carotenoid cleavage dioxygenase 1 (.1) Lus10008443 [exp] 204 / 4e-60 AT4G19170 315 / 1e-102 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G060500 [exp] 873 / 0 AT3G63520 918 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.001G265400 [exp] 870 / 0 AT3G63520 908 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.001G265900 [exp] 852 / 0 AT3G63520 880 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.001G265600 [exp] 850 / 0 AT3G63520 878 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.019G093400 [exp] 357 / 4e-116 AT4G19170 803 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.005G069100 [exp] 355 / 2e-115 AT4G19170 812 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.011G112400 [exp] 350 / 1e-113 AT3G14440 868 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.009G152200 [exp] 340 / 1e-109 AT4G19170 546 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.003G176300 [exp] 339 / 2e-109 AT3G24220 718 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Potri.001G393800 [exp] 337 / 2e-108 AT3G14440 883 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [flax] [poplar] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Lus10019710 pacid=23139218 polypeptide=Lus10019710 locus=Lus10019710.g ID=Lus10019710.BGIv1.0 annot-version=v1.0 ATGGCCGAGATCAAAATCCAGGCGGAAGAGAAGCACAGCGGCAGCAATGTCCGCGGCGGTCCCGTGATCGTCGCCGTGAATCCTAATCCTAGAAAGGGAC TCGCCTCCACTCTTATCGACTTCCTCGAGAAGCTAACCGTCAAAATCGGCTACGGTTCGTCGTCTCTGCCTTTTCACTATCTCTCCGGTCACTTTGCTCC CACCGCCGAGTTCCCTCCGGCCAAAGACCTCTCTGTCAAAGGCTATCTTCCGGAATGCTTGAATGGAGAGTTTGTGAGAGTAGGTCCCAATCCCAAGTTC GCCCCTGTTGCTGGATATCATTGGTTTGATGGCGATGGGATGATCCATGGCTTGCGTATCAAAGATGGGAAGGCGGCATATGTCAGCCGTTATGTGAAGA CATCTCGCCTTCAGCAAGAACAATTCTATGGAGGTCCTAAGTTCCTCAAGATTGGGGATCTCAAGGGCCTTTTTGGATTGTTCATGTTGAACATACATAT CCTGAGATCGAAACTTAAAGTGTTGGATATGGCACATGGAGATGGAACAGCTAATACTGCTCTTGTTTATCATCATGGGAAGCTCCTAGCACTTCAAGAG GCTGATAAGCCTTATGTGGTTAAAGTCATGGAAGATGGGGATCTGCAGACCATTGGCTTGATGGACTATGACAATAGGCTCAAACATTCTTTCACTGCTC ACCCGAAGGTTGATCCATTCACAGGAGAAATGTTTACTTTTGGATATTCACAAGAGCCACCATTTATCACATATAGAGTCATCTCAAAGGACGGCGTAAT GCATGATCCCGTACCAATAACGATTTCAGAGTCTATCATGATGCATGACTTTGCCATTACTGAGAATTATGCAATCTTTATGGACCTTCCTCTCTACTTT AGACCAAAGGAAATGGTGAAACAAAAGAAGTTCGTTTTTACTTTCGATGCAGCTATAAATGCTCGTTTTGGTGTCTTACCTCGATACGCGAAAGACGACC TTATGATCAAATGGTTTGAGCTTCCGAATTGCTTCATATTTCACAATGCCAATGCGTGGGAGGAGGAGGATGAAGTTGTTCTGATCACTTGCCGCCTCGA AAATATAGACATGGATATGTTCAATGGACCTGTCAAGGAAAAGATCCAGAAGTTTGCACATGAACTATATGAAATGAGGTTCAACATGAAAACTGGAGTG GCTTCTCAGAAGAAACTCACAGCATCTGCTCTTGACTTCCCCAGGATCAATGAGAGCTACACCGGCAGGAAACAAAGATACGTCTACGGGACCGTGCTAG CCAGCAACAACATAGCAACGATAACCGGAATAATAAAAATCGATCTCCATGGCGAACCTGAACAGCCGGAGAAAACAAAGCTGGAAGTAGGAGGAAACAT TAGTGGCATATTCAAGTTTGGAAGTGGTAGGTTTGGTTCTGAAGCAGTGTTTGTTCCAAAGAAGCCATGCACTAAGGATGAAGAAGAAGAAGATGATGGA TACTTGATATGCTTTGTGCACGATGAAAACACCGGGAAATCCTCAGGAGTTGTGATCGATGCAAAGACGATGTCTGCTGATCCTGTTGCGGTTGTTGAAT TGCCCAACAGGGTTCCCCATGGATTCCATGCCTTGTTCGTCACAGAAGAACAACTTGAAGAACAGGCTCACTATGATCGCCGGCCTCAGAAGTAA
AA sequence Show only first row Show all	>Lus10019710 pacid=23139218 polypeptide=Lus10019710 locus=Lus10019710.g ID=Lus10019710.BGIv1.0 annot-version=v1.0 MAEIKIQAEEKHSGSNVRGGPVIVAVNPNPRKGLASTLIDFLEKLTVKIGYGSSSLPFHYLSGHFAPTAEFPPAKDLSVKGYLPECLNGEFVRVGPNPKF APVAGYHWFDGDGMIHGLRIKDGKAAYVSRYVKTSRLQQEQFYGGPKFLKIGDLKGLFGLFMLNIHILRSKLKVLDMAHGDGTANTALVYHHGKLLALQE ADKPYVVKVMEDGDLQTIGLMDYDNRLKHSFTAHPKVDPFTGEMFTFGYSQEPPFITYRVISKDGVMHDPVPITISESIMMHDFAITENYAIFMDLPLYF RPKEMVKQKKFVFTFDAAINARFGVLPRYAKDDLMIKWFELPNCFIFHNANAWEEEDEVVLITCRLENIDMDMFNGPVKEKIQKFAHELYEMRFNMKTGV ASQKKLTASALDFPRINESYTGRKQRYVYGTVLASNNIATITGIIKIDLHGEPEQPEKTKLEVGGNISGIFKFGSGRFGSEAVFVPKKPCTKDEEEEDDG YLICFVHDENTGKSSGVVIDAKTMSADPVAVVELPNRVPHGFHALFVTEEQLEEQAHYDRRPQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10019710 [exp]	0	1
AT4G36980			unknown protein		Lus10019346 [exp]	6.6	0.7577
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10010191 [exp]	6.9	0.7430
					Lus10008178 [exp]	7.1	0.7235
AT5G24090		ATCHIA	chitinase A (.1)		Lus10023535 [exp]	15.8	0.7110
AT3G62330			Zinc knuckle (CCHC-type) famil...		Lus10025019 [exp]	17.3	0.7082
AT1G22460			O-fucosyltransferase family pr...		Lus10033494 [exp]	21.4	0.6621
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10027666 [exp]	21.6	0.6981
AT2G33490			hydroxyproline-rich glycoprote...		Lus10035172 [exp]	23.4	0.7168
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10000260 [exp]	25.1	0.6353
AT1G17450			B-block binding subunit of TFI...		Lus10015659 [exp]	25.3	0.7061

Compare expression of checked genes

Lus10019710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.