Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07970 418 / 1e-143 QRT2 QUARTET 2, Pectin lyase-like superfamily protein (.1) AT3G57510 368 / 2e-124 ADPG1 Pectin lyase-like superfamily protein (.1) AT2G41850 360 / 2e-121 ADPG2, PGAZAT ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1) AT1G80170 330 / 4e-109 Pectin lyase-like superfamily protein (.1) AT1G23460 315 / 3e-103 Pectin lyase-like superfamily protein (.1) AT1G70500 310 / 3e-101 Pectin lyase-like superfamily protein (.1) AT3G15720 275 / 1e-87 Pectin lyase-like superfamily protein (.1.2) AT2G43890 271 / 4e-87 Pectin lyase-like superfamily protein (.1) AT1G56710 267 / 8e-85 Pectin lyase-like superfamily protein (.1) AT4G35670 263 / 6e-84 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029511 [exp] 533 / 0 AT3G07970 480 / 1e-167 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10042371 [exp] 414 / 1e-141 AT3G07970 432 / 5e-149 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10026299 [exp] 408 / 6e-141 AT3G07970 418 / 3e-145 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10030602 [exp] 309 / 2e-100 AT1G23460 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10036084 [exp] 305 / 2e-99 AT1G80170 491 / 2e-172 Pectin lyase-like superfamily protein (.1) Lus10029139 [exp] 275 / 4e-88 AT1G23460 574 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10032875 [exp] 269 / 5e-86 AT3G15720 342 / 3e-114 Pectin lyase-like superfamily protein (.1.2) Lus10002125 [exp] 263 / 7e-84 AT3G59850 509 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10002123 [exp] 262 / 1e-83 AT2G43870 498 / 5e-177 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G060400 [exp] 484 / 1e-169 AT3G07970 514 / 0.0 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.006G052700 [exp] 416 / 6e-143 AT3G07970 449 / 7e-156 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.016G054800 [exp] 382 / 2e-129 AT2G41850 421 / 7e-145 ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1) Potri.001G171900 [exp] 339 / 7e-113 AT1G80170 506 / 1e-178 Pectin lyase-like superfamily protein (.1) Potri.001G463000 [exp] 322 / 1e-105 AT1G23460 634 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G211900 [exp] 315 / 3e-103 AT1G23460 638 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.011G159000 [exp] 314 / 1e-102 AT1G23460 667 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G006400 [exp] 278 / 6e-90 AT1G05660 472 / 1e-166 Pectin lyase-like superfamily protein (.1) Potri.015G088600 [exp] 278 / 3e-89 AT1G70500 323 / 1e-106 Pectin lyase-like superfamily protein (.1) Potri.017G006700 [exp] 271 / 5e-87 AT2G43890 591 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10019711 pacid=23139186 polypeptide=Lus10019711 locus=Lus10019711.g ID=Lus10019711.BGIv1.0 annot-version=v1.0 ATGCACCCAAAAAACCCACCAAGGCTTTGGCTTCCTTTCTTCTTCTTCTTAGCCTTTTTCTCCTCTAGTTTTGGATCCTACCCACAACAAACCAACCCAT CAATATTGCCCAGCCAAAACCTTGGTGGGTTTGAAGGAAGAGTGAGCATCAACTCAAAGGCTAAGTCTTCAAAGAGGAGACCATCGCCTCATCATCATCA CCATCATCATCATCAAGTTAGAGTGAAGATTGTGAATGTGGATAAGTTTGGAGCTAAAGGAGATGGAAGATCAGATGATACTCGGGCATTTGGGAAGGCA TGGAAGGCAGCTTGTAATTCATCTAGAGGAACAACTCAATTTGTTGTACCTAAGAACAAGATTTATGTTCTCAAACCCATTGTTTTCGTGGGACCTTGTC GAGCTGATCTCACAGTCAAGATATTTGGAACAATCAAAGCATCGAACAAAGTAGAAGACTATAAAAAAGACAGAACACGATGGATTTCATTCGAAAGGTT GAAGAACTTGAGAGTCAAGGGTGGTGGAACCATCAATGGGAATGGGAAAATCTGGTGGCAAAATTCGTGCAAAGTCAATACTACCCTCCCCTGCACACTT GCACCAAATGCGGTCACGTTCGAGGAATGCACGAACTTGAAGGTAACGAAACTAAGGTTCGAAAATGCACAACAAATGCATCTTTCTTTCAATAATTGCA CCAACGTGAGAGCTTCGCACCTCCTGGTGAATGCTCCATGGAACAGCCCCAATACCGACGGAGTTCACGTCACCCACACTCGCAACATTCACATCACCCG ATCGCTCATCAAAACCGGTGATGATTGCATCTCAATAGTAAGTGGGTCGAAAAACGTGAAGGTTACGGACATAACTTGTGGACCGGGTCACGGCATAAGT ATTGGTAGCTTGGGAGCTGGAAATGCAACGGCTGAAGTCTCAGATGTGTTGGTGAACAGAGCAACGATTTCAGGAACCAGCAATGGAGTCAGAATCAAGA CTTGGCAGGGAGGATCGGGGTATGCTAGGAACATAAAGTTCCAACACATAGTGATGAAGAACGTGAGCAACCCGATAATCATAAACCAGAACTACTGCGA CCAGGACGAGCCTTGTCAGCCACAGGCGTCCGCGGTGAAAGTGAGTAACGTGGTATACAAGAACATAAGGGGGACGAGCGCTACGAAACTGGCGATCAAA TTCGAGTGCAGCGAGAGCGTGCCGTGCGAGGAGATAGTGATGCAGGATGTTTCGTTGATGGAAAGCCAGGAGGAGGCTGAGGATGCTGCAAAGGCTGAAT GTGTTAGCGTGGATTTGACTAGGAAAGGAATTGTTACTCCCTTGTGCTCTCCAACTTAG
AA sequence Show only first row Show all	>Lus10019711 pacid=23139186 polypeptide=Lus10019711 locus=Lus10019711.g ID=Lus10019711.BGIv1.0 annot-version=v1.0 MHPKNPPRLWLPFFFFLAFFSSSFGSYPQQTNPSILPSQNLGGFEGRVSINSKAKSSKRRPSPHHHHHHHHQVRVKIVNVDKFGAKGDGRSDDTRAFGKA WKAACNSSRGTTQFVVPKNKIYVLKPIVFVGPCRADLTVKIFGTIKASNKVEDYKKDRTRWISFERLKNLRVKGGGTINGNGKIWWQNSCKVNTTLPCTL APNAVTFEECTNLKVTKLRFENAQQMHLSFNNCTNVRASHLLVNAPWNSPNTDGVHVTHTRNIHITRSLIKTGDDCISIVSGSKNVKVTDITCGPGHGIS IGSLGAGNATAEVSDVLVNRATISGTSNGVRIKTWQGGSGYARNIKFQHIVMKNVSNPIIINQNYCDQDEPCQPQASAVKVSNVVYKNIRGTSATKLAIK FECSESVPCEEIVMQDVSLMESQEEAEDAAKAECVSVDLTRKGIVTPLCSPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10019711 [exp]	0	1
					Lus10033897 [exp]	1.0	0.9675
AT3G11920			glutaredoxin-related (.1)		Lus10029074 [exp]	3.3	0.9256
					Lus10021373 [exp]	3.5	0.9529
					Lus10034812 [exp]	6.5	0.9483
AT1G03700			Uncharacterised protein family...		Lus10015443 [exp]	7.4	0.9430
AT1G54540			Late embryogenesis abundant (L...		Lus10031317 [exp]	9.2	0.9237
AT5G07475			Cupredoxin superfamily protein...		Lus10012085 [exp]	9.8	0.9436
					Lus10028051 [exp]	10.5	0.8474
AT1G49960			Xanthine/uracil permease famil...		Lus10033773 [exp]	10.7	0.9381
AT1G24405			unknown protein		Lus10037061 [exp]	11.7	0.9338

Compare expression of checked genes

Lus10019711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.