Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28305 252 / 2e-84 ATLOG1 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) AT2G37210 241 / 4e-80 LOG3 LONELY GUY 3, lysine decarboxylase family protein (.1.2) AT3G53450 238 / 8e-79 LOG4 LONELY GUY 4, Putative lysine decarboxylase family protein (.1) AT5G11950 237 / 1e-78 LOG8 LONELY GUY 8, Putative lysine decarboxylase family protein (.1.2) AT5G06300 229 / 2e-75 LOG7 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) AT4G35190 214 / 3e-69 LOG5 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) AT2G35990 208 / 3e-67 LOG2 LONELY GUY 2, Putative lysine decarboxylase family protein (.1.2.3) AT5G26140 161 / 5e-50 ATLOG9 LONELY GUY 9, Putative lysine decarboxylase family protein (.1) AT5G03270 160 / 2e-48 LOG6 LONELY GUY 6, lysine decarboxylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016096 [exp] 251 / 6e-84 AT2G28305 384 / 7e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10021462 [exp] 251 / 7e-84 AT2G28305 386 / 1e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10026513 [exp] 241 / 8e-80 AT2G37210 394 / 1e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10002226 [exp] 232 / 1e-76 AT2G37210 379 / 2e-135 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10026131 [exp] 232 / 1e-76 AT5G11950 350 / 4e-124 LONELY GUY 8, Putative lysine decarboxylase family protein (.1.2) Lus10012436 [exp] 232 / 2e-76 AT5G06300 332 / 7e-117 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Lus10024328 [exp] 232 / 3e-76 AT5G06300 328 / 2e-115 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Lus10023190 [exp] 219 / 1e-71 AT2G37210 364 / 6e-130 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10022638 [exp] 219 / 2e-71 AT4G35190 365 / 2e-129 LONELY GUY 5, Putative lysine decarboxylase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G060300 [exp] 303 / 9e-105 AT2G28305 315 / 3e-110 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.001G265300 [exp] 299 / 5e-103 AT2G28305 288 / 9e-100 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.006G226100 [exp] 253 / 7e-85 AT5G11950 362 / 6e-129 LONELY GUY 8, Putative lysine decarboxylase family protein (.1.2) Potri.009G010800 [exp] 253 / 1e-84 AT2G28305 359 / 8e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.004G212200 [exp] 252 / 2e-84 AT2G28305 361 / 1e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.003G219300 [exp] 242 / 8e-81 AT5G11950 300 / 1e-104 LONELY GUY 8, Putative lysine decarboxylase family protein (.1.2) Potri.016G090500 [exp] 241 / 4e-80 AT2G37210 392 / 8e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.006G127400 [exp] 240 / 1e-79 AT2G37210 396 / 3e-142 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.001G005400 [exp] 234 / 9e-78 AT5G11950 268 / 5e-92 LONELY GUY 8, Putative lysine decarboxylase family protein (.1.2) Potri.005G237600 [exp] 223 / 3e-73 AT5G06300 338 / 2e-119 LONELY GUY 7, Putative lysine decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0349 [flax] [poplar] SLOG PF03641 [flax] [poplar] Lysine_decarbox Possible lysine decarboxylase
Representative CDS sequence Show only first row Show all	>Lus10019712 pacid=23139314 polypeptide=Lus10019712 locus=Lus10019712.g ID=Lus10019712.BGIv1.0 annot-version=v1.0 ATGGAAGGAGGAAGAGAGCAGCTTGGGTCAACTACAACAGCAGAAATTAGGAAGAAGAAGTTCAAGAGCATATGTGTTTTCTGTGGGAGTAGAGCTGGAA CCAAGTCTTCATTCAGTGATGCTGCACTCCACCTTGGTTGTAGTCAATTGGTTGTGGCACCGGACTTTGTTTCCAGTGATCCTGGGTTCGAAGCTCGAAA TGCGCAATCATTTAGGGGCTCATGTGATGACATCACCGGTCTCACCGTTAACCTGACGGCGGCATCACTAAATGTGGTGCCTGTCGAAGGAGTTGAGAGG AAGATTGACTTGGTGTATGGTGGAGGAAGTGTTGGTCTTATGGGTTTGGTCTCAACAACTGTGTTTAATGGTGGATGTCATGTTCTTGGAGTTATCCCTA AAGCTCTCATGCCTCATGAGATTTCAGGAGGGACAATCGGAGAAGTGAAAGTTGTCGCAGATATGCACCAAAGGAAGGCGGAAATGGCGAAACATTGCGA TGCGTTCATTGCACTTCCTGGTGGGTATGGAACCATGGAAGAGCTTTTGGAGATCATAGCCTGGTCTCAGCTCGGAATCCATGACAAACCTGTGGGGCTT TTGAATGTGGATGGATACTACAACTGCTTGCTAGCCTTGTTTGACAAAGGAGTTGAGGAAGGTTTCATTAAGGACACAGCAAGAGAGATTGTGATCATTG CAGATACTCCAGATGAACTTATCAACAAAATGGAGGGGTATGAACCAGTTCATGACAAGGTTGCATCCAGACAAAGCTGGGAAGTGGACCAGTTGACAGA AGCAACTACTAGTTGTGAAGCCCTAACATCTTAG
AA sequence Show only first row Show all	>Lus10019712 pacid=23139314 polypeptide=Lus10019712 locus=Lus10019712.g ID=Lus10019712.BGIv1.0 annot-version=v1.0 MEGGREQLGSTTTAEIRKKKFKSICVFCGSRAGTKSSFSDAALHLGCSQLVVAPDFVSSDPGFEARNAQSFRGSCDDITGLTVNLTAASLNVVPVEGVER KIDLVYGGGSVGLMGLVSTTVFNGGCHVLGVIPKALMPHEISGGTIGEVKVVADMHQRKAEMAKHCDAFIALPGGYGTMEELLEIIAWSQLGIHDKPVGL LNVDGYYNCLLALFDKGVEEGFIKDTAREIVIIADTPDELINKMEGYEPVHDKVASRQSWEVDQLTEATTSCEALTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Lus10019712 [exp]	0	1
AT1G22100			Inositol-pentakisphosphate 2-k...		Lus10010640 [exp]	2.2	0.9010
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10026256 [exp]	7.7	0.8864
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10026255 [exp]	8.2	0.8758
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016471 [exp]	16.0	0.8885
AT5G10530			Concanavalin A-like lectin pro...		Lus10004277 [exp]	22.9	0.8673
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10022603 [exp]	28.4	0.8481
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10003183 [exp]	30.0	0.8666
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Lus10020570 [exp]	37.0	0.8542
AT4G27870			Vacuolar iron transporter (VIT...		Lus10022771 [exp]	39.0	0.8583
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10043228 [exp]	41.5	0.8527

Compare expression of checked genes

Lus10019712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.