Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47940 213 / 3e-58 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016408 [exp] 1381 / 0 AT5G47940 224 / 6e-62 unknown protein Lus10016406 [exp] 309 / 7e-100 AT5G47940 106 / 1e-26 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G265100 [exp] 472 / 1e-153 AT5G47940 290 / 5e-86 unknown protein Potri.009G060000 [exp] 405 / 3e-130 AT5G47940 228 / 6e-65 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019713 pacid=23139249 polypeptide=Lus10019713 locus=Lus10019713.g ID=Lus10019713.BGIv1.0 annot-version=v1.0 ATGGAACCGTCGGAGACTGCTCCCTCAGCTGCTTCGTCCTGGACATCTGTTACCAACTGGACCGTCGCCGGTGGCTCTGTCGACAACTCCGTCACCTTCG AGTCCTCTCTTTCTCTCATCGACGATCTAGACAACGACAGTCTCGATCAGTCGACGGTCGGTGATGCAAATTTACGATCTCCTCTCATCCTCTACCCTCC CTCTCCTGATTCCTCTTCCTGCGAGATCACACTTACCTTTGCACAGAAGCACGAGGTGAGGCAGGTGTATGTCAGAAGCACGGCTAGAGTCTTTGAAATA TACTGTGATCCTGATTCGGAAAACAGTGGGGAGTATTTGTGTACTGTTCGTGGCTGTGTTGCTGTTAGAGATGAAGAAGTGCTTCGTGTAACTAATATTG AAGAAGCTGTACTGGTGCATCAAATGGGCTCCAATAAAGAGCTGGCTGGAGATAAAACTAAAATTGGTGCTAGCCCAACTGCCAGTGAAGATGACTGGGT TGATGTCAAGGTTCCTTGTGCTTCTCCTTCTTTTGAGAAAACTCGTTCCATGTCATCAAGTTCTGACACGGATGGAGGGTGCACCTCACAGGATCTATAT GAAGCTACAGCAGAGATTAGTGACACAAATCCTTGCAAGTCACTCAAGATCAGACTTCTTTCACTTCAGAACAAAGGTTGTGTATGTATTCATGAAGTGT ATGTATTTGCTGAGCCCGTTGATGAGTCTACTCTGGAAAATCAGGCAGTTCCGATGGGAAACTCTTCTGGGAGTTCACTTATGACTATGCTCCTTCCAAC ACTTTTCCAGTTATCTAAAACACAAGGAATTGGCCGAGATCAAGATAAACACAACGTTGATACAGTAGGACAGATGTCTGTTGAGGCTAGTTCGATTTCA ACTGATGAAATTGGAGCAAGAAACATAAGTAAGGAAGAACTTGTTCCTTCCGATACTCATTCACTAGAACACAAGTCGGTGGAAGTGAGCTCATTAACAT CTGATTCAATTAGTACGCACAGGGAGGTTCTGCATGAAGGAAAAGATCTTCTGCCGTTTGGTGAAAGAAGTGGCGTTCCAGATGCAGCCCATGTTTCGGT CCCTGCTTCTGTTTCAGAAACAGATTACAAAGGCGCTTCATCCGAAAACTGCATTGGAAGTGTACTGGATCACCTTCTTTCTCGGGTCAACAGAATAGAA GATCTCTTTTTGAGGTTTGAGGATAGAATTATGAAGCCTATAATCAGCATCGATGAGAGACTCCAGCAAGTGGAGCAGCATCTTGAAGTGATCACAAAGA AAACCTGTAACCTTGGTACGAGAATTTCAGCTCCTGAATTTTGCTATAGCGAATCAGAATCCAACTCCTTTTATAACAGTGGAAGTTTAGATCTCAGTTA TACGGCGTGTGAAGCAACAAAGAAAGACCCAACTATGGTCATGTCATCTATTCCCCCTGATGTCACCTCTCTTTCAGAAAGTAAAACTCTGCCACAGCTG AGTCTATTAGCTAGTGTCCCTGCGTTCGATAATGCTAAGGATGAAAAGAATCTTGCAGTGGAGTCGGTTCAGGAAACTCAGAAGCTTGAGCAAAAACATT CTGTATCAATTGATTATGCTTTGGCATCTGCATTTGCTGGCTTCTTGTCTTCTACTTCATCAGAGTGCCATACCTATTCTCCAATCCTTGCAGTGAGAGC TCCTGACTTTCCTAATGAGGATGAAAATGAAAATGACGACAATCAAACTTCTTCGTCTAGCATGCAATCAGAAATTACTACGGATCCTCAAGATAGTGAT GAGATTGAAGGTCTCCCAAAGTTGCATCCTGAAGAAACCACTGAGGCAAGAGACTTGACAACTTCAGTTACGTCTTTTCCCTGTAGTAAGAACGTGACCG GCTTAGTCAATCTTGAGGAACTTCTAAAGGCAGAAAGAGCTGCTAATGGGCAGTGCCAGAATGGCGAAGCACATGAAGACGATGCAAACAATGTTGCTCT TGCTCATTTAGCTGCACAAGAGAACGATGCTGTAGGAGGGGTTGATTCTCATCTAGTGCTGGAAGACATAGAAAAGGGAGAGGCTAATGATTATTCAACT AGCAATGCTGCTATTCTTGAGCAAACTGAGATTTTTAAAGAATCATCGGAAGACCAGACTGATGGCAACTTCAATGATCCTCCTCATATATTAGATTCCA CATTAGTCGCTGAACCAAACTTGAGTCAAGAGGAACTGAAGAGTGTTATTCAGCTATCGCGAACCTCTTCTGCAGTTGATTATGACAACCCAATACTGGA GGTGAAATTCATAACTGAAGAGAGGTTGGATGCAGGATCTCCTCTTCAAGCACTTTTATCCAGCTTTGGTGATCATGTTGAAGCTCCATCGACCCATGTA GAATCTGACAACAACATGTCCAGTCTTGACAGTCATGGAGATTTGATTCCAGTAGAGGATTGGGAAGCGGCTAACTCTCCTACAATGGACAGCCGCAGCT TCATTGATACAAACTATTGCAGCCTCGGAGATGTGAATGTGAACACAGAAGCAATAGATAAACCAGATGATTCCGTGTTGTGCAGCAACCAAGAAGGCTC TACAACAAGCCTGATATAG
AA sequence Show only first row Show all	>Lus10019713 pacid=23139249 polypeptide=Lus10019713 locus=Lus10019713.g ID=Lus10019713.BGIv1.0 annot-version=v1.0 MEPSETAPSAASSWTSVTNWTVAGGSVDNSVTFESSLSLIDDLDNDSLDQSTVGDANLRSPLILYPPSPDSSSCEITLTFAQKHEVRQVYVRSTARVFEI YCDPDSENSGEYLCTVRGCVAVRDEEVLRVTNIEEAVLVHQMGSNKELAGDKTKIGASPTASEDDWVDVKVPCASPSFEKTRSMSSSSDTDGGCTSQDLY EATAEISDTNPCKSLKIRLLSLQNKGCVCIHEVYVFAEPVDESTLENQAVPMGNSSGSSLMTMLLPTLFQLSKTQGIGRDQDKHNVDTVGQMSVEASSIS TDEIGARNISKEELVPSDTHSLEHKSVEVSSLTSDSISTHREVLHEGKDLLPFGERSGVPDAAHVSVPASVSETDYKGASSENCIGSVLDHLLSRVNRIE DLFLRFEDRIMKPIISIDERLQQVEQHLEVITKKTCNLGTRISAPEFCYSESESNSFYNSGSLDLSYTACEATKKDPTMVMSSIPPDVTSLSESKTLPQL SLLASVPAFDNAKDEKNLAVESVQETQKLEQKHSVSIDYALASAFAGFLSSTSSECHTYSPILAVRAPDFPNEDENENDDNQTSSSSMQSEITTDPQDSD EIEGLPKLHPEETTEARDLTTSVTSFPCSKNVTGLVNLEELLKAERAANGQCQNGEAHEDDANNVALAHLAAQENDAVGGVDSHLVLEDIEKGEANDYST SNAAILEQTEIFKESSEDQTDGNFNDPPHILDSTLVAEPNLSQEELKSVIQLSRTSSAVDYDNPILEVKFITEERLDAGSPLQALLSSFGDHVEAPSTHV ESDNNMSSLDSHGDLIPVEDWEAANSPTMDSRSFIDTNYCSLGDVNVNTEAIDKPDDSVLCSNQEGSTTSLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47940			unknown protein		Lus10019713 [exp]	0	1
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10030485 [exp]	3.3	0.7897
AT5G26200			Mitochondrial substrate carrie...		Lus10025015 [exp]	5.7	0.7558
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10012835 [exp]	9.6	0.7347
AT5G55600			agenet domain-containing prote...		Lus10016606 [exp]	11.7	0.7671
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Lus10011116 [exp]	13.7	0.7001
AT4G03000			RING/U-box superfamily protein...		Lus10041244 [exp]	19.0	0.7281
AT2G44200			CBF1-interacting co-repressor ...		Lus10038730 [exp]	19.0	0.7206
AT3G26560			ATP-dependent RNA helicase, pu...		Lus10036783 [exp]	19.9	0.6768
AT1G02290			unknown protein		Lus10028606 [exp]	25.1	0.7077
AT3G13682		LDL2	LSD1-like2 (.1)		Lus10037885 [exp]	25.5	0.6678

Compare expression of checked genes

Lus10019713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.