Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47970 597 / 0 Aldolase-type TIM barrel family protein (.1.2) AT3G63510 597 / 0 FMN-linked oxidoreductases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016405 [exp] 766 / 0 AT3G63510 575 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2) Lus10029508 [exp] 693 / 0 AT3G63510 618 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2) Lus10039605 [exp] 640 / 0 AT3G63510 619 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2) Lus10016407 [exp] 503 / 8e-180 AT3G63510 374 / 6e-130 FMN-linked oxidoreductases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G264900 [exp] 682 / 0 AT3G63510 607 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2) Potri.009G059900 [exp] 658 / 0 AT3G63510 591 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01207 [flax] [poplar] Dus Dihydrouridine synthase (Dus)
Representative CDS sequence Show only first row Show all	>Lus10019714 pacid=23139266 polypeptide=Lus10019714 locus=Lus10019714.g ID=Lus10019714.BGIv1.0 annot-version=v1.0 ATGCAAATTAAGAAAAATTCGTGGGAGAGGTTTATCGCAGCTATCGAATCTCTTCACGCTGGAGCCATTGAAGTCCGAGGAGGTGGAAGGGGCCGCCGTG AAGCCTTAGCAGTGTCTCTCCGATTGCCACTAGATATATGTTTTAAGACTTCATCGAAGATTAGACCGTTTTCTGCATATTCTCAGAAGCAGCAGTTGCA TTCAAAAGCGGAGATGGTGGTTGCAAAATATCAGCCTCCTCTTTTTAGCGTTGCGCCAATGATGGAATGGACAGACAACCACTACAGGACTCTTGCTAGG ATCTTATCAAAACATGCGTGGCTTTATACTGAGATGCTGGCAGCTGAAACGATTGTTTACCAAGAGGGGAATCTGGACAGATTTTTGGCTTACTCCCCTG ATCAGCATCCCATTGTACTTCAAATTGGGGGAAATAACTTGGATAACATTGCAAAAGCGGTAAAACTTGCTAATGCATATACCTACGATGAGATCAATTT GAACTGTGGTTGTCCTAGTCCGAGGGTGGCTGGACATGGGTGTTTCGGCGTCCGCCTTATGCTTGATCCAAAGTTTGTTGCCGAGGCTATGTCAGTAATT GCAGCTAACACCGACGTTCCTGTCAGTGTCAAATGCCGAATTGGTCTAGATGATCATGATTCTTATAATGAGCTTTGTGATTTTATATATAAAGTGTCTG CTCTTTCCCCAACTAAGCATTTTGTAATACATTCACGGAAAGCTTTGCTCAATGGCATCAGCCCTGCAGACAATAGAAAAATTCCTCCTCTGAAATATGA GTACTATTATGCTCTCTTGCGTGATTTTCCTGACTTGAAATTTACAATAAATGGTGGAATCAACAATGTTGATGAGGCAAATGCAGCGCTGAAGGCAGGA GCACATGGTGTAATGGTTGGACGTGCTGCTTATTACAATACCTGGAATGTTTTGGGACATGTTGATACTGATATCTATGGGGCACCGCCAAGTGGTCTTA CACGTCGTCAGGTCCTCGAACAGTATCAAGTATATGGTGACTCTATTCTTGGCACCTATGGCAACAATAGGCCTAGTCTCCGGGATGTGATGAAGCCTAT ACTCGGATTCTTTTATTCTGAGCCTGGGAACAGTCTCTGGAAACGCAAAGCTGATGCTGCATTCCTGAAATGCAAGACGGTTAAATCCTTTCTCGACGAA GCCCTCGAAGCGATTCCCGACAGAGTCTTGGACGCCACTGTTGCTGAAGCACCATTGGGCCGCGAAGATCTTTTTGCTAACGTCAAAGGAATCCTCCCAC CTCCATATGAAACCAGAGAAGAAGAGGAGCTGATGTATGCTTAA
AA sequence Show only first row Show all	>Lus10019714 pacid=23139266 polypeptide=Lus10019714 locus=Lus10019714.g ID=Lus10019714.BGIv1.0 annot-version=v1.0 MQIKKNSWERFIAAIESLHAGAIEVRGGGRGRREALAVSLRLPLDICFKTSSKIRPFSAYSQKQQLHSKAEMVVAKYQPPLFSVAPMMEWTDNHYRTLAR ILSKHAWLYTEMLAAETIVYQEGNLDRFLAYSPDQHPIVLQIGGNNLDNIAKAVKLANAYTYDEINLNCGCPSPRVAGHGCFGVRLMLDPKFVAEAMSVI AANTDVPVSVKCRIGLDDHDSYNELCDFIYKVSALSPTKHFVIHSRKALLNGISPADNRKIPPLKYEYYYALLRDFPDLKFTINGGINNVDEANAALKAG AHGVMVGRAAYYNTWNVLGHVDTDIYGAPPSGLTRRQVLEQYQVYGDSILGTYGNNRPSLRDVMKPILGFFYSEPGNSLWKRKADAAFLKCKTVKSFLDE ALEAIPDRVLDATVAEAPLGREDLFANVKGILPPPYETREEEELMYA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63510			FMN-linked oxidoreductases sup...		Lus10019714 [exp]	0	1
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Lus10003953 [exp]	4.4	0.8445
AT5G24650			Mitochondrial import inner mem...		Lus10032913 [exp]	11.0	0.7679
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Lus10020405 [exp]	16.7	0.8098
AT5G18390			Pentatricopeptide repeat (PPR)...		Lus10003575 [exp]	25.1	0.7650
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10029482 [exp]	26.7	0.7800
AT3G53170			Tetratricopeptide repeat (TPR)...		Lus10024893 [exp]	27.1	0.8055
AT4G11175			Nucleic acid-binding, OB-fold-...		Lus10037352 [exp]	28.6	0.7896
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Lus10018770 [exp]	30.6	0.7882
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10026460 [exp]	30.9	0.7806
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Lus10002287 [exp]	31.2	0.7657

Compare expression of checked genes

Lus10019714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.