Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08020 651 / 0 PHD finger family protein (.1) AT3G52100 414 / 2e-132 RING/FYVE/PHD-type zinc finger family protein (.1) AT3G52090 167 / 1e-48 NRPE11, NRPD11, NRPB11, ATRPB13.6 DNA-directed RNA polymerase, RBP11-like (.1.2) AT3G61740 60 / 7e-09 SDG14, ATX3 SET domain protein 14 (.1.2) AT2G29540 55 / 7e-09 ATRPAC14, ATRPC14 RNApolymerase 14 kDa subunit (.1.2.3) AT1G77250 53 / 7e-07 RING/FYVE/PHD-type zinc finger family protein (.1) AT3G61723 41 / 0.0002 PHD finger protein (.1) AT5G53430 44 / 0.0005 SET29, ATX5, SDG29 SET domain group 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016404 [exp] 1453 / 0 AT3G08020 569 / 0.0 PHD finger family protein (.1) Lus10042764 [exp] 59 / 2e-08 AT1G77250 301 / 1e-95 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10040717 [exp] 52 / 5e-08 AT2G29540 132 / 3e-41 RNApolymerase 14 kDa subunit (.1.2.3) Lus10029733 [exp] 57 / 6e-08 AT1G77250 313 / 5e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10016452 [exp] 52 / 6e-08 AT2G29540 131 / 9e-41 RNApolymerase 14 kDa subunit (.1.2.3) Lus10010121 [exp] 57 / 7e-08 AT3G61740 1008 / 0.0 SET domain protein 14 (.1.2) Lus10012626 [exp] 57 / 7e-08 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10019026 [exp] 54 / 7e-07 AT4G27910 1171 / 0.0 SET domain protein 16 (.1) Lus10004012 [exp] 52 / 3e-06 AT3G61740 424 / 2e-136 SET domain protein 14 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G264800 [exp] 763 / 0 AT3G08020 701 / 0.0 PHD finger family protein (.1) Potri.009G059700 [exp] 739 / 0 AT3G08020 748 / 0.0 PHD finger family protein (.1) Potri.009G059500 [exp] 711 / 0 AT3G08020 763 / 0.0 PHD finger family protein (.1) Potri.009G070900 [exp] 171 / 6e-50 AT3G52090 219 / 2e-75 DNA-directed RNA polymerase, RBP11-like (.1.2) Potri.001G246600 [exp] 52 / 5e-08 AT2G29540 136 / 6e-43 RNApolymerase 14 kDa subunit (.1.2.3) Potri.005G183700 [exp] 56 / 2e-07 AT1G77250 315 / 2e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.012G013900 [exp] 52 / 1e-06 AT5G53430 1423 / 0.0 SET domain group 29 (.1) Potri.002G076900 [exp] 52 / 1e-06 AT1G77250 332 / 3e-107 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.014G098400 [exp] 51 / 5e-06 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.015G014300 [exp] 50 / 7e-06 AT5G53430 1322 / 0.0 SET domain group 29 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019715 pacid=23139270 polypeptide=Lus10019715 locus=Lus10019715.g ID=Lus10019715.BGIv1.0 annot-version=v1.0 ATGGTTAGTCTTCTGCTCCGACGAATCTGCTTCTGCGCGCTAGGGTTTCCGCGGGATCTGCTCGGTCAGAGATCCAAGGCCGATTTCCTGCTCGATGTTT CCAGGATCGAGGAGCTGCTGTTGAACGATTCCTCGCGGATTAGGGCTTCCGCCGAGGCTAAAACCGTCCAGGTTCTGGTCCCTAAGGTTGTGCCTCCTCC TGCTCCTGTTGTTCCTAGTGCTTCGATCTCGGTTCCGGCTCCTAGTGCTTTGATCTCGGTTCCGGTACCGGCTACTGCATTGCCGCCACCACCTGTTGCT GTTGCTGCTGCTGCTGCTGCAGGAGGTGATGGTGATGGCGGAGAGGATTCAGAGGCTTTGTCTGCCAATGCGCACACCAAGCGTGTGGCGCTTCAGAAGA AGGCTGCTGCTACTATGGTTGCTGCTGAGGATTTTGCCAGGAGGTTTGAGTCTGGTGATGCTGGGGCAGTTACAAAAGACATTAATGGAGATGAGCAAGC TCTTTCCAACACAAAGGTCATGTGTCGGATGTGCTTCTCTGGCGAAAGTGAAGGCAGTGAGAAAGCAAGGAAGATGCTATCTTGTAGAACTTGTGGGAAG AAGTATCACAGGAGCTGTATGAAATCTTGGTCTCAACATAGAGATCTATTTCACTGGAGTTCATGGAACTGCCCATCTTGTCGAACATGTGAGATATGCC GAAGAACTGGAGATCCAAATAAGTTTATGTTCTGCAAAAGGTGTGATGGTGCTTACCATTGTTACTGCCAGCATCCTCCTCACAAGAATGTGAGTTCAGG ACCATATTTGTGCTCCAAACATACAAGGTGCCACAGTTGTGGGTCTACTGTCCCTGGAAATGGTTTAAGCGTGAGGTGGTTTCTGGGATACACATGCTGT GATGCTTGTGGAAGATTGTTTGTGAAGGGGAACTACTGCCCTGTTTGTTTGAAGGTCTATAGAGACTCAGAATCAACACCAATGGTCTGTTGTGATATTT GCCAACGCTGGGTGCATTGTCATTGTGATGGCATCAGTGACGACAAATATGAGCAATATCAACATAATAATAATCTCCAGTATGTATGCACAACATGTCG TGGAGAGTGCTATCAGGTAAAAGATGTTGAAGATGCTGTTCAAGAGCTGTGGAGAAGACGAGATTCAGCTGATCATGACTTGATTGCGAGCTTGAGGGCT GCTGCAGGATTGCCAACTCAAGAAGATATATTCTCTATATCACCCTACTCTGACGATGAAGAGAATGGGCTCATGATGCCGAAAAATGAGTTTGGGCGTT CTTTGAAGTTTTCCCTCAAAGGTGTCATTGATAAGTCTCCAAAGAAGAGCAAAGACCATGGAAAGAAGCATTCTAATAAAAAGTCGAGCAAAAAGAAGAG CTCCGATATTCCTTCAATCAGCAAGACAGATATAGATGTAGATCAGTTTGAAACACCATCTTACAGACACAGTTCTGCAGATAAAAAGATTGATGACTCT CAGCCTCATACAAATGCTGGTTTGGTACGACATCCTTCTCCTGTTGCTGGTATTTTAAATCACACTGTGGTGGACAACTCTGTTAGTCAGCCAGGCAGTC TGCAACAGAAATCTGCTGATGAGGTGATGGTTACTGATGTGGATAACAAGGCACCAAGGGTTGTTATGCTTAAGAGCAATAAACCTCGCAATACAGATAG TGGAGAAGATAGTGACAAGCATGACAGCAATCTGAAATCTGGAAGAACCAAGAAGCTGGTTATAAACCTTGGGGCACGGAAATTAAATGTTAATAGTTCC CCGAAGCCTGATGCTTCAAGCTGCCAGAAAGAACAAGATTTGCCAAATTCCAATGGAAGTGAAGATACAGTTCCTCCTAAGATACCAGCTGACATGCCTG TGGATAAAGAGAATGGGACTGCTAAACCTGGTAGTGATGGTGCCAGAATTCATAAACCTGGCCAAGTAATTCTGAAATTTGCACGAAGGGGGAGTAACTT GATTAAACTTGGGAAAGTGAAAGAAGCAACTGAAGGGAAACCGAAAGCTGAACGAGATAGCGGTGGCGCAACCACAGCTGCAGCTGGGAGCACCAGTGAG GTTCCGATCGAGAAGCCACTGGAAGCAAAACAAGCAGAAGAAAGGCCAGCCACAACAAATACTGACACCAATGATGAATCCGCTGGGACAAATCAATCTC CTTCTTTGCCTAAGGATTCAAAGTTCTCTTTGAAGCTAAAGATTAAGAAACCTAGTCTGGAGACTCAAAGCTTGCAAAATCCTCCGGTGGCTGAAGAAAA AACTTCATCCATAAGAGGGCAGAGGTCGAAAAGGAAAAGGTCATCAGCCTTTGCAGTACAAGACAATGAGATGTTGGAAGCTAGTTGGATCCTCAAAAAG CTCGGAAAAGATGCGATTGGAAAGCGAGTTGAAGTCCACCAGCCATCTGAAAGCTCATGGGTTTCGTACGAGAGGGACACCAAGATCATCAATGCCGCCT CCTTCACTCTAGAGAGGGAAGAGCACACCATCGGAAACATCCTCCGCATGCAGCTACACAGGGACAAGAATGTTCTGTTTGCTGGTTACAAGCTCCCTCA CCCTCTTCAGTACAAAATTCTTATCCGGATTCACACCACTAGCCAGTCTTCACCAATGCAAGCATATAACCAAGCTATCAATGATCTAGACAAGGAACTT GACCACTTGAGATCAGAGTTTGAGGTATGGAACTATGCTTTCACTTTTTCCTATTTAAAACTTACAGAGGTATCTGTGATAAACAAGTAA
AA sequence Show only first row Show all	>Lus10019715 pacid=23139270 polypeptide=Lus10019715 locus=Lus10019715.g ID=Lus10019715.BGIv1.0 annot-version=v1.0 MVSLLLRRICFCALGFPRDLLGQRSKADFLLDVSRIEELLLNDSSRIRASAEAKTVQVLVPKVVPPPAPVVPSASISVPAPSALISVPVPATALPPPPVA VAAAAAAGGDGDGGEDSEALSANAHTKRVALQKKAAATMVAAEDFARRFESGDAGAVTKDINGDEQALSNTKVMCRMCFSGESEGSEKARKMLSCRTCGK KYHRSCMKSWSQHRDLFHWSSWNCPSCRTCEICRRTGDPNKFMFCKRCDGAYHCYCQHPPHKNVSSGPYLCSKHTRCHSCGSTVPGNGLSVRWFLGYTCC DACGRLFVKGNYCPVCLKVYRDSESTPMVCCDICQRWVHCHCDGISDDKYEQYQHNNNLQYVCTTCRGECYQVKDVEDAVQELWRRRDSADHDLIASLRA AAGLPTQEDIFSISPYSDDEENGLMMPKNEFGRSLKFSLKGVIDKSPKKSKDHGKKHSNKKSSKKKSSDIPSISKTDIDVDQFETPSYRHSSADKKIDDS QPHTNAGLVRHPSPVAGILNHTVVDNSVSQPGSLQQKSADEVMVTDVDNKAPRVVMLKSNKPRNTDSGEDSDKHDSNLKSGRTKKLVINLGARKLNVNSS PKPDASSCQKEQDLPNSNGSEDTVPPKIPADMPVDKENGTAKPGSDGARIHKPGQVILKFARRGSNLIKLGKVKEATEGKPKAERDSGGATTAAAGSTSE VPIEKPLEAKQAEERPATTNTDTNDESAGTNQSPSLPKDSKFSLKLKIKKPSLETQSLQNPPVAEEKTSSIRGQRSKRKRSSAFAVQDNEMLEASWILKK LGKDAIGKRVEVHQPSESSWVSYERDTKIINAASFTLEREEHTIGNILRMQLHRDKNVLFAGYKLPHPLQYKILIRIHTTSQSSPMQAYNQAINDLDKEL DHLRSEFEVWNYAFTFSYLKLTEVSVINK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08020			PHD finger family protein (.1)		Lus10019715 [exp]	0	1
AT4G39680			SAP domain-containing protein ...		Lus10019680 [exp]	3.9	0.8499
AT1G70180			Sterile alpha motif (SAM) doma...		Lus10030825 [exp]	25.9	0.7622
AT3G53320			unknown protein		Lus10023170 [exp]	28.5	0.8256
AT1G22660			Polynucleotide adenylyltransfe...		Lus10025499 [exp]	36.4	0.7986
AT1G26370		RID1	RNA helicase family protein (....		Lus10037067 [exp]	41.8	0.8290
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10037059 [exp]	46.6	0.8316
AT3G04160			unknown protein		Lus10021983 [exp]	65.1	0.7733
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Lus10015543 [exp]	65.1	0.8025
AT4G25120		ATSRS2	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10016712 [exp]	66.8	0.8127
AT3G46210			Ribosomal protein S5 domain 2-...		Lus10037991 [exp]	69.1	0.8200

Compare expression of checked genes

Lus10019715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.