Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52080 819 / 0 CHX28 cation/hydrogen exchanger 28 (.1) AT2G13620 337 / 3e-103 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G05580 281 / 3e-82 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT5G41610 277 / 3e-81 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT4G23700 262 / 9e-76 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT2G31910 254 / 1e-72 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT3G17630 253 / 1e-72 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT1G16380 245 / 6e-70 ATCHX1 CATION EXCHANGER 1, Cation/hydrogen exchanger family protein (.1) AT3G53720 218 / 4e-60 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT1G64170 217 / 8e-60 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016403 [exp] 1516 / 0 AT3G52080 856 / 0.0 cation/hydrogen exchanger 28 (.1) Lus10029506 [exp] 1275 / 0 AT3G52080 850 / 0.0 cation/hydrogen exchanger 28 (.1) Lus10035312 [exp] 316 / 6e-95 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 304 / 9e-91 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10017540 [exp] 290 / 3e-85 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10032332 [exp] 275 / 4e-80 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10024131 [exp] 265 / 1e-77 AT1G79400 580 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Lus10004932 [exp] 263 / 8e-76 AT2G13620 568 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10024132 [exp] 259 / 6e-75 AT1G16380 641 / 0.0 CATION EXCHANGER 1, Cation/hydrogen exchanger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G059400 [exp] 1056 / 0 AT3G52080 803 / 0.0 cation/hydrogen exchanger 28 (.1) Potri.001G264600 [exp] 944 / 0 AT3G52080 710 / 0.0 cation/hydrogen exchanger 28 (.1) Potri.013G142301 [exp] 303 / 8e-91 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.001G096320 [exp] 303 / 1e-90 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.007G105200 [exp] 300 / 1e-89 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.003G194200 [exp] 286 / 8e-85 AT1G79400 625 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Potri.003G194100 [exp] 278 / 6e-82 AT1G79400 597 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Potri.010G004800 [exp] 278 / 2e-81 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G005200 [exp] 274 / 5e-80 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.003G134900 [exp] 273 / 7e-80 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10019716 pacid=23139308 polypeptide=Lus10019716 locus=Lus10019716.g ID=Lus10019716.BGIv1.0 annot-version=v1.0 ATGAACAATGCCACAGCGGGGAAGCTTGATACCGTCGAAGAATCGGCTTGCCAGAACTTCATCACCTACACCGTTAAAAACGAGCCTGGAAAAATCATTG GTCTCATTTTGACGTATGTTCTGAGTTACCTCCTTCACCACCTCCTCAAGCCTCTCTCCCAGCCTCGAATCGTCTCCGACATTACCATAGGTCTCATCAT CGGCAACATACAATGGATACGCAACGCATGCGACCCAAAATTCATCGAAACACTAAACTTCATAGCGGAGTTCGGCATGATATGCCACGTATTCGCCCTC GGATTGGAGATGAACCCGAAATCGATCTTCAAAGCGCCATCTCACGACGCGATGATCGCATACACAGGGATGATCTCGACCATCGTTCTGGTATGCGGTA CGGTGCCGTTGCTGATGTACACAAGCAAACTCGCCACCATTGGCTTCACAGTCACCTTGGCAATGGCACTAGCAGGAAGTGGCTCTCCTATCCTGACAAG GATTATAACCAACCTGAAAATTGGGAAATCGGACATAGGTAAGCTCGTGATTGCGGCGGGGCTTTACTCCGACCTAGTGTCGATGTTCCTCTTCTGCTTC GGCTACCTCTTAGGACCCACCAACAAAATGGAGACGACGAATCGTCTGATCAAGGCGCTGACCATGGGAATCGCATTGCTGCTCCAGACCTTGTTTGCTG CCAAGATTTCGCCGATTTTCATGAGGTGGGTCAACAACGAGAACCCGGAAGGGAAACCAATGAAAGGTTCGCATTTGGTGCTCGCCATTGCGTTCATGGT CCTGGTTTGTAGCGCTTCCCCGATATACGGGTATAGCCCCATTTTGAGCGCGTTCATGGCTGGAATTTTCCTCCCGAATGAAGGCAGGGTGTCGAAATGG GCGGTTGGGAAGATCAACTATCTTTTGACGACAGTTTTCTACCCGGTTTTCTTCTTCTGGATGGGGATTCATGCCGAGCTTCGACTGTTTAAGGTGGGGC ATTGGATGACTTGGGCGAGGCTGTTTGTTCTTCTGGGCATCTCGGTGTTCGGTAAGGTTATCGGGACAGTCGCCTGTGGAGCGATGCTGGGATTCCATTG GCGCGAATCCGCCGAGCTTGGACTTCTGTTGAATGTCAAGGGTCATTTCCACGTGTTCCTCGCCATCTCTGGTCGTGTGTATAGTATTATACCAACCTCG ACAAGTATCATGATCATTGTGGCGATCTTCATCACGATCGTGCAAGCACCGTCGATCGTGTTGCAGATCATCAAGCGGGCTAGAAGACGTGCCCCGACTC ATCAGAGGGCGCTTCAGATGCTCAACCCTGTGAACGAGCTCCGAGTGTTGTTGTGCCTGCACGGTCCGCACAACATCAACTCATCAGTCAACTTCATGGA GATAACTCGAGGGGCGCCTGATCCTGGAATTATGGTCTTTGTAACCGACATGGTTGAGCTTACTGACCAGATTGCGGCCACTTTAGTGCAGAGCGAAGGA TTGGACACGGTCACTGTGACGGACAAGGGCGTTACGGAGATGAGGGACCTTATCACCAGCCACATACAGGGTTATGTAGATGAGAGCGGCGAAGGCATTT CGATTAGGAGAATGCTCGCTCTCTCGACATTCAATGGCATGGCGCAGGACATTTTCATGTTGGGAGAAGACTTGATGGCCACCTTAATCATACTTCCGTT TCACAAAACTCTACGAGAAGACGGGACTATGGATACCGGAAATCCAGGGTTTCGTTACGTGAATCGCAAGGTGCTTAGAAACTCTCCGTGTTCCGTCGGC ATATTGGTGGATCGAGGTTTCGGAGCACTAGAGAACATATCAAGGACCCCGAAATCAGTTCTCGTAGCAGTTATTTTCATCGGCGGGAGAGACGACAGAG AAGCACTAGCATACGCAGGCAGGGTGGCAAGGCATCCGGGAGTGAAGCTCACGGTGTTGAGGTTTCTACTCGACGATAGCTTGGAATCCTCGAGAAGAGG CAACTACAGAGTAAACAAGGCAGAGAAAGAAGAAGAAGTGAAGCTCGACGACGAATGCTTCGCTCACTTCTACGAGAGACACGTCGCGGCCGGGCACGTC GCGTACATGGAGAAGCATCTTGCGAATTCGGCGGCGACTTATTCGACATTGAGATCGTTGGAAGGACAGTACGCGCTCATTATTGTAGGGAGGGGAGGAA GGGTGGACTCGATATTGACGATCGGGATGAACGATTGGCAGCAATGCCCGGAATTAGGACCGGTGGGCGATGTTCTTTCGGGTTCCGACCTCTCACACAG GACTTCTGTTTTGATCATTCAACAACACAACATCAAAGGAGAATTGCAGGGTGTAGAGGATGATTTCAATATCATGTAA
AA sequence Show only first row Show all	>Lus10019716 pacid=23139308 polypeptide=Lus10019716 locus=Lus10019716.g ID=Lus10019716.BGIv1.0 annot-version=v1.0 MNNATAGKLDTVEESACQNFITYTVKNEPGKIIGLILTYVLSYLLHHLLKPLSQPRIVSDITIGLIIGNIQWIRNACDPKFIETLNFIAEFGMICHVFAL GLEMNPKSIFKAPSHDAMIAYTGMISTIVLVCGTVPLLMYTSKLATIGFTVTLAMALAGSGSPILTRIITNLKIGKSDIGKLVIAAGLYSDLVSMFLFCF GYLLGPTNKMETTNRLIKALTMGIALLLQTLFAAKISPIFMRWVNNENPEGKPMKGSHLVLAIAFMVLVCSASPIYGYSPILSAFMAGIFLPNEGRVSKW AVGKINYLLTTVFYPVFFFWMGIHAELRLFKVGHWMTWARLFVLLGISVFGKVIGTVACGAMLGFHWRESAELGLLLNVKGHFHVFLAISGRVYSIIPTS TSIMIIVAIFITIVQAPSIVLQIIKRARRRAPTHQRALQMLNPVNELRVLLCLHGPHNINSSVNFMEITRGAPDPGIMVFVTDMVELTDQIAATLVQSEG LDTVTVTDKGVTEMRDLITSHIQGYVDESGEGISIRRMLALSTFNGMAQDIFMLGEDLMATLIILPFHKTLREDGTMDTGNPGFRYVNRKVLRNSPCSVG ILVDRGFGALENISRTPKSVLVAVIFIGGRDDREALAYAGRVARHPGVKLTVLRFLLDDSLESSRRGNYRVNKAEKEEEVKLDDECFAHFYERHVAAGHV AYMEKHLANSAATYSTLRSLEGQYALIIVGRGGRVDSILTIGMNDWQQCPELGPVGDVLSGSDLSHRTSVLIIQQHNIKGELQGVEDDFNIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Lus10019716 [exp]	0	1
					Lus10009439 [exp]	6.0	0.9375
AT3G22640		PAP85	cupin family protein (.1)		Lus10042615 [exp]	7.3	0.8785
AT5G55930		ATOPT1	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10035123 [exp]	7.4	0.8776
					Lus10025571 [exp]	8.7	0.8517
AT2G23570		ATMES19	ARABIDOPSIS THALIANA METHYL ES...		Lus10020004 [exp]	8.9	0.8944
AT1G02335		GL22	germin-like protein subfamily ...		Lus10020632 [exp]	11.2	0.9295
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10018758 [exp]	12.1	0.8831
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Lus10016403 [exp]	12.2	0.7650
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10019872 [exp]	12.4	0.9266
AT5G06500	MADS	AGL96	AGAMOUS-like 96 (.1)		Lus10012154 [exp]	15.6	0.9155

Compare expression of checked genes

Lus10019716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.