Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21080 985 / 0 Uncharacterized protein (.1) AT2G41830 829 / 0 Uncharacterized protein (.1) AT1G05960 618 / 0 ARM repeat superfamily protein (.1.2) AT5G26850 498 / 3e-161 Uncharacterized protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016400 [exp] 1670 / 0 AT5G21080 538 / 5e-175 Uncharacterized protein (.1) Lus10001161 [exp] 655 / 0 AT1G05960 999 / 0.0 ARM repeat superfamily protein (.1.2) Lus10006583 [exp] 633 / 0 AT1G05960 960 / 0.0 ARM repeat superfamily protein (.1.2) Lus10026298 [exp] 580 / 0 AT2G41830 1083 / 0.0 Uncharacterized protein (.1) Lus10029842 [exp] 520 / 4e-169 AT5G26850 1115 / 0.0 Uncharacterized protein (.1.2.3.4) Lus10020697 [exp] 506 / 6e-164 AT5G26850 1103 / 0.0 Uncharacterized protein (.1.2.3.4) Lus10042372 [exp] 367 / 3e-110 AT2G41830 840 / 0.0 Uncharacterized protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G128000 [exp] 712 / 0 AT1G05960 1014 / 0.0 ARM repeat superfamily protein (.1.2) Potri.006G052100 [exp] 681 / 0 AT2G41830 1110 / 0.0 Uncharacterized protein (.1) Potri.016G055100 [exp] 670 / 0 AT2G41830 1184 / 0.0 Uncharacterized protein (.1) Potri.013G008500 [exp] 525 / 4e-171 AT5G26850 1132 / 0.0 Uncharacterized protein (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019717 pacid=23139209 polypeptide=Lus10019717 locus=Lus10019717.g ID=Lus10019717.BGIv1.0 annot-version=v1.0 ATGGGTGCGGTTGCGAGGACTATATTTCCTGTGTGTGAAAGCTTGTGTTTCTTCTGTCCTTCATTGCGTACGAGGTCCAGGCATCCTCTTAAGCGCTACA AGAATTTGCTTGCTGATATTTTCCCCCGTTCCCCGGATGAACAACCAAATGATAGAAAGATTGGTAAATTGTGTGAATATGCTTCTAAAAACCCTCTCCG TATCCCAAAGATCACCACTTCTTTGGAGCAAAGATGTTACAAGGATCTGAGAACCGAACAGTTCCACTCTGTAAAAGTTGTATTGTGCATCTACAGGAAG TTATTAGTCTCTTGTAGAGAGCAACTGCCATTGTTCGCAAGTAGCTTACTCGGCATCGTACACATCCTATTGGATCAAACTCGTCATAATGAGATACGAA CTTTAGGATGCCAAGCCCTATTTGACTTTGTAAATAATCAGATAGATGGTACATATGTCTTCAATTTAGACAGTTTAGTTCCGAAACTGTGTGCTTTAGT TCAGGAGATGGGTGAAGATGAGAAGATACAGAATCTTCGGTCTGCTGGTCTTCAATCTCTTTCAGCAATGGTGTGGTTCATGGGTGAATTCTCACATATT TCTGCAGATTTTGACAATGTTGTTTCAGTTGTCTTGGAAAATTACGAAGCACAAAATGGTTCGAACAATGAAACAGCAAAAACAAATGTTGAAGAAGCAA AGGAAGCTGCAACTATGCCACATGTCCTGGAATCTTTGTTCTGCTACTTTCTTAGTGGTGACCTCTGGGCTCCTGAAGATGGTCTTGCTCTAACAGTCCT ACTGGATATGCAGTTAATAGTGGAGAATTCAGGACATAATACACACTTTGTGTTGGCTATCTTAATCAAGCACCTTGATCATAAGAATGTTCTGAAGAAG CCTGACATGCAGCTTGACATTGTTCATGTCGCCACTTCTCTTGCGGAGGCGACTAAGGCTGATCAATCTCTGGCCATTGTTGGTGCCTTGAGTGATATGA TGAGACACCTAAGAAAAAGCATACACTGCTCTCTGGATGATTCTGATCTGGGGTCTGAAGTAATTGAGTGGAATCGTAAATTTCGAGAGGCGGTGGATGA GTGCCTCGTACAATTGTCACTCAAGGTAGGAGATGCAGATCCTATTCTCGATGTGATGGCTGGGATGTTAGAGAACATGTCAAGTATTACAGTCATGGCC AGAACCTTGATTGAGACTGTTTATCGTACTGCTCAAATTGGATTTCCGGAGGCATTATTTTTCCAGTTACTTCGAGTTATGGTATGTGATGACCATGTCA CAAGGGTGGGCGCACATCGTGTATTCTCGGTGGGTCTTGTCCCGTCTTCTGTTTGTCCCCGTACAGACAATGGTTCCCTCGTCGCTAATAAGTCTGCCGA TGTCCAAAGAATGCTTTCAAGAACAGTGTCAGTGTTTTCTTCCTCGGCTGCACTCTTTGAAAAGATGAAACAGGAACCGAAACAAAACACCAACAGTAGT GATGCTATGAAAATTAGTCAGTCTACAATGGCTAGGATGAGGTCTGCGTATAGTCGAGCTTATAGCATAAAAGATATAACACCGCCTTTGCCAGCTGATG TGAGTACCATGACTGTTGAAGAGAAAGAACAGATAATATCCCTTAGGTTGAGTAGTCGGCAGATAGGACTTCTGCTATCATCACTTTGGGCACAGTCCCT CTCACCCCTCAATATACCTTCAAATTATGAAGCGATTGCTCATAGTTACAGCCTGACATTGCTATTTGCAAGAACCAAGAACTCCTCCAATGAAACTTTG ATCAGAAGCTTTCAGCTTGCATTCTCTCTAAGGAGCTTTGCACTTGCAGGGGAAGGAGGGCGACTAAAGCCATCCCGCCGCAGATCCCTATTTACCTTAG CATCATCGATGATCTTATTTACGTCCAAAGCTTACAACATCCCACCTCTTGTTTCCAGTGCCAAAGCTGCAATGACAGATAAAACGGTCGATCCATTTCT TCATTTGGTTGATGAGAGCAAGTTACAAGCTGGTAACATGGATATCAGCCAGCCAAATAAAGCTTATGGATCCAACGAAGATGACGAGCATGCAAAGAAG TCACTTTCAGGGATAGAAACAACACAGAGCCAATCTAAAGAAGCATTAGCAACAATGATGTTGAAGTTTCTGAGACTACCATCGAATCTTCTTGAGCAGG AAGAGGCATCCATGCGAGAACAATTGCTCGGTGATTTCATACCCCACGATTCATGTCCTCTGGGAGCCGAATTGTTCATGGATGTGACAGATCAGAAGAA GTCAGTACCAAAAGCAAAGGAAGTAGAACCTTCTGACAGGGATGCACCTTCATTGTTTACGATTGACGACAACGCTCCTTCAACAACTGAAGGCCAGACG GAAGCTGATAAGCAGCATCACGCCGCAACTCCAAGCCTCATTAGCGTTGGCGACCTTCTAACTGCAGTGTCTGAAACAACACAACAAGTTGGAAGATCTT CAGTCTCGACGCCTCCCCATATTCCTTACATGGAAATGGCTGGCCATTGTGAAGCCCTTTCAGCAGGAAAGCAGCAAATGATGTCTGCTGTATTGTCTGT TCAGCAGAGACAAGAAAGTTCGGTTAGAATGATGTCCGCCATCGAACCGAACAAGCCGAAGAAGAACCCGTTCGATCTTCCCGTTGAACAGGGTGGAAAC CCATTCCTCGACGAAGACTTCTTTGCAAACCTTCCAAATGCAAACGGGACAATGCAGTGCGGAGCGGAGTACCAGCAGCACCAGTACTTCCAGTTACCGG CTTCTAGTCCGTACGACAACTTTCTGAAGGCTGCTGGCTGTTGA
AA sequence Show only first row Show all	>Lus10019717 pacid=23139209 polypeptide=Lus10019717 locus=Lus10019717.g ID=Lus10019717.BGIv1.0 annot-version=v1.0 MGAVARTIFPVCESLCFFCPSLRTRSRHPLKRYKNLLADIFPRSPDEQPNDRKIGKLCEYASKNPLRIPKITTSLEQRCYKDLRTEQFHSVKVVLCIYRK LLVSCREQLPLFASSLLGIVHILLDQTRHNEIRTLGCQALFDFVNNQIDGTYVFNLDSLVPKLCALVQEMGEDEKIQNLRSAGLQSLSAMVWFMGEFSHI SADFDNVVSVVLENYEAQNGSNNETAKTNVEEAKEAATMPHVLESLFCYFLSGDLWAPEDGLALTVLLDMQLIVENSGHNTHFVLAILIKHLDHKNVLKK PDMQLDIVHVATSLAEATKADQSLAIVGALSDMMRHLRKSIHCSLDDSDLGSEVIEWNRKFREAVDECLVQLSLKVGDADPILDVMAGMLENMSSITVMA RTLIETVYRTAQIGFPEALFFQLLRVMVCDDHVTRVGAHRVFSVGLVPSSVCPRTDNGSLVANKSADVQRMLSRTVSVFSSSAALFEKMKQEPKQNTNSS DAMKISQSTMARMRSAYSRAYSIKDITPPLPADVSTMTVEEKEQIISLRLSSRQIGLLLSSLWAQSLSPLNIPSNYEAIAHSYSLTLLFARTKNSSNETL IRSFQLAFSLRSFALAGEGGRLKPSRRRSLFTLASSMILFTSKAYNIPPLVSSAKAAMTDKTVDPFLHLVDESKLQAGNMDISQPNKAYGSNEDDEHAKK SLSGIETTQSQSKEALATMMLKFLRLPSNLLEQEEASMREQLLGDFIPHDSCPLGAELFMDVTDQKKSVPKAKEVEPSDRDAPSLFTIDDNAPSTTEGQT EADKQHHAATPSLISVGDLLTAVSETTQQVGRSSVSTPPHIPYMEMAGHCEALSAGKQQMMSAVLSVQQRQESSVRMMSAIEPNKPKKNPFDLPVEQGGN PFLDEDFFANLPNANGTMQCGAEYQQHQYFQLPASSPYDNFLKAAGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41830			Uncharacterized protein (.1)		Lus10019717 [exp]	0	1
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10027383 [exp]	7.2	0.7547
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10043077 [exp]	23.1	0.7801
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10012272 [exp]	35.0	0.7645
AT2G44380			Cysteine/Histidine-rich C1 dom...		Lus10037470 [exp]	41.9	0.7444
AT1G21090			Cupredoxin superfamily protein...		Lus10029783 [exp]	43.1	0.7607
AT3G52270			Transcription initiation facto...		Lus10023502 [exp]	54.5	0.7537
AT1G58100	TCP	TCP8	TCP domain protein 8, TCP fami...		Lus10019949 [exp]	108.4	0.7191
AT4G36970			Remorin family protein (.1)		Lus10039007 [exp]	127.8	0.7315
AT4G24670		TAR2	tryptophan aminotransferase re...		Lus10027678 [exp]	132.0	0.7157
AT3G27030			unknown protein		Lus10012542 [exp]	160.6	0.7002

Compare expression of checked genes

Lus10019717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.