Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63500 590 / 0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT1G14740 289 / 2e-83 Protein of unknown function (DUF1423) (.1) AT5G48160 269 / 6e-78 OBE2 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT3G07780 256 / 2e-73 OBE1 OBERON1, Protein of unknown function (DUF1423) (.1) AT5G57380 67 / 7e-11 VIN3 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) AT3G24440 51 / 6e-06 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016399 [exp] 1836 / 0 AT3G63500 717 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10030770 [exp] 263 / 3e-79 AT1G14740 394 / 7e-133 Protein of unknown function (DUF1423) (.1) Lus10012327 [exp] 262 / 2e-75 AT5G48160 878 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10006372 [exp] 261 / 6e-75 AT5G48160 871 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10013248 [exp] 239 / 2e-69 AT1G14740 466 / 7e-160 Protein of unknown function (DUF1423) (.1) Lus10030769 [exp] 95 / 3e-22 AT1G14740 136 / 5e-38 Protein of unknown function (DUF1423) (.1) Lus10028170 [exp] 54 / 6e-07 AT5G57380 239 / 8e-72 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10042869 [exp] 53 / 2e-06 AT5G57380 237 / 5e-71 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10019393 [exp] 50 / 1e-05 AT3G24440 381 / 6e-126 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G059000 [exp] 1054 / 0 AT3G63500 693 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.001G264100 [exp] 1047 / 0 AT3G63500 660 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.010G102600 [exp] 315 / 1e-91 AT1G14740 773 / 0.0 Protein of unknown function (DUF1423) (.1) Potri.008G138100 [exp] 310 / 5e-90 AT1G14740 729 / 0.0 Protein of unknown function (DUF1423) (.1) Potri.002G221500 [exp] 265 / 1e-76 AT5G48160 811 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.014G164800 [exp] 256 / 2e-73 AT5G48160 859 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.018G091500 [exp] 59 / 2e-08 AT4G30200 612 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.018G076500 [exp] 53 / 1e-06 AT3G24440 531 / 0.0 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Potri.006G167800 [exp] 52 / 3e-06 AT4G30200 627 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.006G158676 [exp] 50 / 2e-05 AT3G24440 523 / 9e-179 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF07227 [flax] [poplar] PHD_Oberon PHD - plant homeodomain finger protein
Representative CDS sequence Show only first row Show all	>Lus10019718 pacid=23139279 polypeptide=Lus10019718 locus=Lus10019718.g ID=Lus10019718.BGIv1.0 annot-version=v1.0 ATGAAGAGGCTGAGATCGAGTGATGATCTTGATTCCTACAGTGAGAAGAGCTCCTCCCTCAAGGATTTGGGCGCAAATCGATCCAATTCGCGGAGCTTTT ACCACAAATCCGATGGTGTAAGGAAGGGTGGTATAGTGTCAGCTTCATCTCCCTCCAGCAGGTATGATCGGGATAGATCTATTGACGATGATTCCCGAGA CAGTCCGAGGTTTGTTCGGAAGCGAAGTGATTACGATTTGGATAGCTTTGATAGAAGGAAAGGAATGGGATCTTCTTCTGGGTTTGATCGGTATGGAGGT AGTAGAGAAGGGTACAGTGGTGGTGGAGTTGGCAGCAATGGTGGTGGGATTAGTGCTGATAGAGCTGTTCATCGATCCGAGAGCTTCTCCGGTTCGAGGA GGGAGTTTCCGAAGGGATTTAGGTCGGAGAGGGATCGGTCCAGAAGGGAAGGGAGTGTGTCCTCCTGGAGGAGGTTTGGCAGTGGGAGCAAGGATTTTGA GGAAGGGAGAGGGAGCAGAAGTGGGAATGAGGATAAAATGGCGGTAACTAGGATTTCTCCTAAAGGTTTGAAGGAGGTAAAGTCGCCGACTTGGTCAAGG GACTCGAGCAGTGAGCAGTCGAAAATGTTTAGGGGCAGTGATAGGGATGAAGGTAAGGGAAAGTCTTGGACTTCCAAGTCGAGGTCATCGCCATCTTGGT CGAAAGAGTCTGGTAGCGAGCAACAATCAAAGAGTGTGGAGGTCGGGAAGAGGAATGTTGATGTCGAGGTGAAAAGTGTTGAAATTGAAGCGACGAAAAG TATTGAAGTGGAAGCAACGAGAAGTATTGAAGTGGAAACGCGTAGTGCTGAGGTGGAGACGAGAAGTGTTGAAATGGAGGTGAAGAGTGTCCAGAGTGGC AGCAGTAGTGAGATGGAGGAAGGTGAGCTCGAGCCGGAGCCTGACTTGAAGCAAGAGGTTGACAAGGAGAATGAGAATGAATCCCTAAAAGGAGTGAAGA TTGACACTGAAGTGAAGGAACTAGAGAACGAAGTCACAAAAATCGAGATAAAGGATATTGACAAGGCAGTTGAGCTGTCAAACTGTGAGGAAATCTTGAA TAAGGAACCTGGCATCGATGTTGATGGGATCAGAAATCGGGGTTATCAAGTAACTGAAGAGGTCAAGAACTCAGAGGAACTCAGTAGTGGTCAAGCTAAG GCGGTTGAGAAGGCGAAGGACGCAGTTGACAAGAATGTGCTCGAGAATCGGTTTGATCTAGAAGCTAAAGTTGACCAAGCTGATATCGAGAGATCGAAAA ATGAAGTTGTGCAAGACAATGAAGAAGCTCCGCTGAACTCGAATATTGTTACTCAGAATTTGGCTCAAAACATGAAGGATAAAGGTAAGAGTGTGATTGT TTCACCCGCTCGTGTTGTTGCCGATGATGTTCTTTCATCCAGGGACAGAGAAGTTGATATGGAGGGACCAAGTAACCGGGGATTCGAGCTTTTCGGTAAC TCCCCCGTGAGGAAAGTAGAGAAAGAGGAGCAATCTGGTGGTGGTAACAACAAACAGAAAGATGAAAGGCGAGTTTTAGAGCCACTTGATCTCTCTCTGA GCTTACCCAATGTGTTGTTACCTATCGGTGCTACGAAAGATACAACTCAAGCCCCCCGGGGTGCTCAGAGTGATGCAAGAAGTCTTCATTCTTTCAGCTC ATTCCGAACAAACTCCGATGGATTCACTGCTTCCATGTCTTGCTCAGGCTCACAGTCGTTTTTCCACAACCCGAGCTGTTCGCTAACTCATAACTCGTTG GATCTCGACAATATCGAACAATCTGTTCACAGCCGCCCCCTATTCCAGGGGATTGATTGGCAGGCTCAGGCTCAGAATCAAAACGATTCGAATTCAAAGC ACAAGGATACTCCGTCCTTGTACCAGAAAATCTTGATGAATGGAAATGGGTCACTTCATCAGGGCATATCAAATGGTCAACCAGTTCATGGAAGCTCGAA AACATCGAACGGTCTCGAAAGACAAATGAGTTTGCATAAGCAATCTTCTACTTCGCAGAGCATTGGTTCTCAAGATATGGTTCCGAGTAGCTATAGCTTC GACAAGAAGCGAGCAGCGAGGGAGAAGCATAATAGCAGTAGCCTGTACAGGAGTAACAGTCAGAAAGAGGAACGATTTTCAATAGGTGGAGCCGATTTCG TCGAGACTGTAATCAGCAGAATAGTCTCTGATCCAATCCACGTCATGGCTCGAAAGTTTCACGAGATGACAGCACAGTCCGCATCTTGTTTGAAGGAGAG CATCCGAGAGATAATGCTGAACGCTGATCGGCAAGGCCAGTTGTGTGCTTTTCAAACTGCTCTCCATAACCGGTCCGATTTAACATTGGACACCATTCTA AAGTCTCACAGGGCACAGCTCGAAATACTCGTGGCTCTGAAATCCGGACTGGTGGAATATCTTAAAGTGGACACCAGCGTCTCCTCCTCTGACCTGGCAG AGGTTTTCTTGAATTTGAAATGTCGAAATCTCGCTTGTCGGAGTCCTTTACCTGTAGACAACTGTGACTGCAAGGTTTGCACGAAAAAGACCGGTTTTTG CAGCACTTGTATGTGTCTGGTGTGCTCGAAATTCGACATGGCATCGAATACTTGTAGCTGGGTGGGTTGTGATGTCTGTCTTCATTGGTGTCACGCCGAT TGCGCTTTACGAGAAGCTTACATAAGAAATGGGAGGAGTCCGACCGATGTCAACCAAGGGAGTACAGAGATGCAGTTCCATTGTGTGGCTTGTGATCATC CTTCTGAGATGTTTGGTTTCGTTAAGGAAGTGTTTCAGAACTTTGCGAAAGAATGGACGGCAGAGACGTTGTGCAAAGAGCTCGAGTATGTCAAGAGGAT TTTCGGGGGCAGTAAAGATGCAAGGGGGAGGCGGCTTCATGAGATTGCGGATCAGATGCTCGCGAAAATGGCTAATAAGTCGAATTTTCGACAGGTTTAT AGTCACATCATGGGGTTCCTCACTGACAGTGATTCTTCGAAGTTCGCAAATGCTACTGCTGCTTACAGCGGCAAGGAACAATTGAAAGGCGGTATTTCTA GCAGCGTACCGGGCCCTAGTCAGGACGGAAATTGGCGGAAGTTAGTCAGTTCCGAGAAGGGACCTAAACTGGAGAGATCATCCAGTTTGCTTCCTACATT TCCACCCGATCTGAACGACAAACGTCCAGTTGATACCGAGTTGCTCCCAAGAAGCAGCAGCCTGAAAGAACCGGTTTTCGACGAACTCGAAGGCATCGTG AGGATCAAACAAGCGGAAGCTCAAATGTTCCAAACCCGTGCTGATGACGCTAGAAGAGACGCAGAAGGTACTGCTGCTTACTGCGGCAAGGAACAATTGA AAGGCGGTATTTCTAGCAGCGTACCGGGCCCTAGTCAGGACGGAAATTGGCGGAAGTTAGTCAGTTCCGAGAAGGGACCTAAACTGGAGAGATCATCCAG TTTGCTTCCTACATTTCCACCCGATTTGAACGATAAACGTCCAGTCGACACCGAGTTGCTACCGAGAAGCAGCAGCCTGAAAGAACCGGTTTTCGACGAA CTCGAAGGCATCGTGAGGATCAAACAAGCGGAAGCTCAAATGTTCCAAACCCGTGCTGATGACGCTAGAAGAGACGCAGAAGGGCTGAAACGAATCGCGA TTGCCAAGAACGAAAAGATCGAAGAGGAGTATGCAAGCAGGATAGCCAAGCTGCGGTTATCAGAGACCGAAGAGCTTCGGAAACAGAAGCTGCAAGAGTT CCAGGCGCTGGAGAGAGCTCACCGGGAGTATTTCGGGATGAAGATGAGGATGGAAGCGGATATCAAGGATCTGTTGCTGAAAATGGAAGCGACGAAACGG AATCTCGCCATTTGA
AA sequence Show only first row Show all	>Lus10019718 pacid=23139279 polypeptide=Lus10019718 locus=Lus10019718.g ID=Lus10019718.BGIv1.0 annot-version=v1.0 MKRLRSSDDLDSYSEKSSSLKDLGANRSNSRSFYHKSDGVRKGGIVSASSPSSRYDRDRSIDDDSRDSPRFVRKRSDYDLDSFDRRKGMGSSSGFDRYGG SREGYSGGGVGSNGGGISADRAVHRSESFSGSRREFPKGFRSERDRSRREGSVSSWRRFGSGSKDFEEGRGSRSGNEDKMAVTRISPKGLKEVKSPTWSR DSSSEQSKMFRGSDRDEGKGKSWTSKSRSSPSWSKESGSEQQSKSVEVGKRNVDVEVKSVEIEATKSIEVEATRSIEVETRSAEVETRSVEMEVKSVQSG SSSEMEEGELEPEPDLKQEVDKENENESLKGVKIDTEVKELENEVTKIEIKDIDKAVELSNCEEILNKEPGIDVDGIRNRGYQVTEEVKNSEELSSGQAK AVEKAKDAVDKNVLENRFDLEAKVDQADIERSKNEVVQDNEEAPLNSNIVTQNLAQNMKDKGKSVIVSPARVVADDVLSSRDREVDMEGPSNRGFELFGN SPVRKVEKEEQSGGGNNKQKDERRVLEPLDLSLSLPNVLLPIGATKDTTQAPRGAQSDARSLHSFSSFRTNSDGFTASMSCSGSQSFFHNPSCSLTHNSL DLDNIEQSVHSRPLFQGIDWQAQAQNQNDSNSKHKDTPSLYQKILMNGNGSLHQGISNGQPVHGSSKTSNGLERQMSLHKQSSTSQSIGSQDMVPSSYSF DKKRAAREKHNSSSLYRSNSQKEERFSIGGADFVETVISRIVSDPIHVMARKFHEMTAQSASCLKESIREIMLNADRQGQLCAFQTALHNRSDLTLDTIL KSHRAQLEILVALKSGLVEYLKVDTSVSSSDLAEVFLNLKCRNLACRSPLPVDNCDCKVCTKKTGFCSTCMCLVCSKFDMASNTCSWVGCDVCLHWCHAD CALREAYIRNGRSPTDVNQGSTEMQFHCVACDHPSEMFGFVKEVFQNFAKEWTAETLCKELEYVKRIFGGSKDARGRRLHEIADQMLAKMANKSNFRQVY SHIMGFLTDSDSSKFANATAAYSGKEQLKGGISSSVPGPSQDGNWRKLVSSEKGPKLERSSSLLPTFPPDLNDKRPVDTELLPRSSSLKEPVFDELEGIV RIKQAEAQMFQTRADDARRDAEGTAAYCGKEQLKGGISSSVPGPSQDGNWRKLVSSEKGPKLERSSSLLPTFPPDLNDKRPVDTELLPRSSSLKEPVFDE LEGIVRIKQAEAQMFQTRADDARRDAEGLKRIAIAKNEKIEEEYASRIAKLRLSETEELRKQKLQEFQALERAHREYFGMKMRMEADIKDLLLKMEATKR NLAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63500			Protein of unknown function (D...		Lus10019718 [exp]	0	1
AT1G73160			UDP-Glycosyltransferase superf...		Lus10014499 [exp]	3.2	0.9080
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10014423 [exp]	3.5	0.9157
AT1G03280			Transcription factor TFIIE, al...		Lus10011554 [exp]	4.2	0.9064
AT1G11320			unknown protein		Lus10013574 [exp]	4.7	0.9307
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10038903 [exp]	9.2	0.8774
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010067 [exp]	12.6	0.9134
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10031361 [exp]	14.0	0.8995
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Lus10037923 [exp]	17.1	0.9041
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10009398 [exp]	18.0	0.8926
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Lus10024010 [exp]	18.2	0.8802

Compare expression of checked genes

Lus10019718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.