Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23890 1558 / 0 ATTOPII, TOPII topoisomerase II (.1.2) AT5G04130 95 / 2e-19 GYRB2 DNA GYRASE B2 (.1.2) AT3G10270 81 / 5e-15 GYRB1 DNA GYRASE B1 (.1) AT2G13720 72 / 1e-13 DNA topoisomerase (ATP-hydrolyzing)s;ATP binding;DNA binding (.1) AT3G10690 53 / 2e-06 GYRA DNA GYRASE A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016397 [exp] 2321 / 0 AT3G23890 1682 / 0.0 topoisomerase II (.1.2) Lus10012114 [exp] 104 / 3e-22 AT5G04130 1060 / 0.0 DNA GYRASE B2 (.1.2) Lus10010428 [exp] 102 / 7e-22 AT5G04130 1080 / 0.0 DNA GYRASE B2 (.1.2) Lus10028879 [exp] 66 / 3e-10 AT3G10690 1344 / 0.0 DNA GYRASE A (.1) Lus10008940 [exp] 47 / 0.0002 AT3G10690 1053 / 0.0 DNA GYRASE A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G058900 [exp] 1802 / 0 AT3G23890 1691 / 0.0 topoisomerase II (.1.2) Potri.001G264000 [exp] 1773 / 0 AT3G23890 1716 / 0.0 topoisomerase II (.1.2) Potri.016G036200 [exp] 111 / 2e-24 AT5G04130 1080 / 0.0 DNA GYRASE B2 (.1.2) Potri.006G039400 [exp] 110 / 2e-24 AT5G04130 1025 / 0.0 DNA GYRASE B2 (.1.2) Potri.010G247000 [exp] 68 / 5e-11 AT3G10690 1366 / 0.0 DNA GYRASE A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0329 [flax] [poplar] S5 PF00204 [flax] [poplar] DNA_gyraseB DNA gyrase B CL0329 [flax] [poplar] PF00521 [flax] [poplar] DNA_topoisoIV DNA gyrase/topoisomerase IV, subunit A
Representative CDS sequence Show only first row Show all	>Lus10019720 pacid=23139293 polypeptide=Lus10019720 locus=Lus10019720.g ID=Lus10019720.BGIv1.0 annot-version=v1.0 ATGGTGGCGAGCAAGAAGGCACCGCTGATGACGAGCAGCAGCGCCAACGTCGGTGCAGATCCGTCGCCTCTCGATGGCCAACAGAAGACGATCGAAGAGA TGTACCAGAAGAAGACCCAACTGGAGCACATCCTGCTCCGGCCGGACACCTACATTGGCTCGATTGAGAAGCACACGCAGATGCTCTGGGTGTACGAAGA CGGGAAGATGGTGAATCGCTCAGTCACCTACGTTCCTGGGCTGTACAAGATCTTCGACGAGATCTTGGTGAATGCTGCTGATAACAAGCAGAGGGATCCG AAGATGAATTCGTTGAAGGTGTCGATTGACGTGGAGAACAACCTCGTCAGTGTTTACAACAACGGGGATGGAGTTCCTGTGGAGGTTCACAAGGAAGAAG GCGTTTACGTTCCTGAGTTGATTTTTGGCCATTTGTTGACTAGTAGTAACTATGATGACAATGAGAAGAAGACGACTGGTGGTAGGAATGGTTATGGAGC TAAGCTGACCAATATATTCTCTACCGAGTTTGTGATTGAGACCGCTGACGGAAAGAGGCTGAAGAAGTACAAGCAGGTTTTCACTAACAACATGGGCACG AAATCTGAGCCCGAGATAAGTAAGTGCATGGCATCAGAAAATTGGACAAAGGTTACCTTCAAGCCTGATTTAGATAAGTTCAACATGACTCATCTTGAAG AAGACGTGGTTGCCCTGATGAAGAAAAGGGTGCTTGACATGGCTGGCTGTCTGGGAAAAGGAGTGAAGGTTGAGTTGAACGGTAACCATATTCCCGTGAA GTCATTCCAGGACTATGTGAACCTCTACCTGGATTCCACTTCTGAAAATGGCGTGCGTCGTATGAGCTTCTACGAAAAATGTGGCGACAGGTGGGAATAT TGTATCAGCATAACTGAAGGGCAATTCCAGCAGGTCAGCTTTGTCAATTCCATTGCCACTATTAAGGGTGGTACCCATGTAGACTGTGTGACAAACCAGA TCACAAGTTATGTGACTGAAGTTGTCAATAAGAAGCATAAGAATGCTCACCTGAAAGCCCATAATGTCAAGAACTATTTGTGGGTTTTTGTCAATGCTCT CATTGACAATCCTGCATTCGATTCTCAAACGAAGGAAACTCTAACACTGCGCCAGAGCAGTTTCGGGTCTAGTTGTCAAGTGTCTGAAGACATTTTGAAG AAAGTTGTGAAATCGGAGATTGTGGAAAATCTCCTCAACTGGGCACAGTTTAAGCAGCAAAAAGAACTCAAGAAAACTGACGGGTCAAAAACATCCAGGA TCAATGTTCCAAAGTTGGAAGATGCTAATGAGGCTGGAGGCAAGAACTCTGAGAAGTGCACACTCATTTTGACAGAAGGAGATTCAGCCAAGGGCTTGGC GGTTTCAGGGCTGTCTGTAGTTGGTCGTGACTACTATGGTGTGTTCCCACTAAGAGGTAAGTTGCTCAATGTCAGGGAAGCCACCGTTAAGCAGCTGAAC GAGAACAAGGAAATTCAGTACTTGAAGAAGATTTTGGGTTTAAGACAAGATAAAACGTACGAAGATGTCAAGTCATTGAGATATGGCCATATGATGATCA TGACAGATCAGGACCACGATGGTTCTCATATTAAAGGATTGCTGATCAACTTCATCCACTCTTTCTGGCCATCGTTACTCAGAGTTCCTTCCTTCGTTGT TGAGTTCATAACTCCCATTGTGAAGGCAACTAGTAAGAGAGGCCAAGTTCTGTCCTTCTATACGATGCCTGAGTACAAGACGTGGTCTGACAATCTTGGA ACTGCAAAAAACAACTGGTCCATCAAGTATTATAAGGGGTTGGGAACGAGTACTGACAAAGAAGGAAAGGAGTACTTCAGCGATCTTGATAAGCACAAGA AAGATTTCATGTGGGTGGATGACAATGATGGAAATGCTATAGAGCTTGCTTTCAGCAAGAAGAAGATAGAAGCCAGGAAAGACTGGATTCGACAACATGA GCCTGGAACTCATCTAGATCAGGCTGACAAGCTCATCAAATACAGCGATTTCATCAATAAGGAGCTTATATTGTTTTCAGTTGCCGATCTTCAAAGGTCT ATCCCTTCCATGGTTGATGGACTGAAGCCAGGTCAAAGAAAAATCCTTTTTGCTGCTTTCAAGAAGAACCTTGTGAAAGAATTGAAGCTGTCCCAGTTCA TTGGTTATGTTTCTGAGCAAAGTGCTTACCATCACGGGGAGCAAAGTCTCAACAGTACAATTGTTGGGATGGCGCAGAACTTTGTTGGCAGCAACAATAT TAACCTCTTCGTACCAGCTGGAAATTTTGGCACTCGGGCTAGTGGCGGTAAAAATGCAGCAAGTGCAAGATACATTCACACTCGCCTTTCACTTATAACG AGATTCCTTTACCCCAAAGACGACGACTGCATTCTTGACTACCTTGAAGATGATGGACAGTCCATTGAACCAACATGGTACATGCCAATAATACCTATGG CTCTGGTCAATGGTAGTGAAGGAATTGGCACAGGATGGAGTACCTTCGTTCCTAACTACAACCCAAGAGATATCGTCGCCAACATAAGGCGGTTGTTGAA CGAGGAAATGATGGAGCCCATGGAACCGTGGTATAAAGGCTTCAGAGGAACAATTGTTAGAGGTGTATCAAAGGAATCTGGAGTCACCTATTCTTGTAAT GGACTCATTGACGAAGTTGACGAGACAACTATCAAAGTGACAGAGCTGCCTATCCGTACTTGGACCGACAATTTCAGAGAATATCTGAAATCAGTGACGG AAGGGCTTAAGGATGAGAGTGGCAACGCTCCTAAGGATCCCTTGATCAAGGGTTATCATGAACAAGGTGATGACAATGAGTTTGAGTTCACCATTACATT GTCAGAGGAGAAGGTGCAACTTGCTAGGACCGAGGGTTTGCTGAAGAAGTTTAAGCTCACTAGCTCTATCAGCACAACTAACATGCATCTCTTTGATCCG TCTGGGAAGATCAAGAAATACGACAATCCAGAACAAGTGATTGAGGAATTCTTCCACTTGAGGCTTGTGTATTACGACAAGAGGAAGAAAACAAAATTAG CTGCTCTTGAGCTAGAGCTACTTAGGTTGGAGAACAAAGTGAGGTTTATCCTGGCAGTGGTGAACGGCGAAATCATAGTGAACAACAGAAAGAGAGCTGA TCTCATCCAAGAACTTCACCAGAAGGGATTTACTCCGATGCCAATCAAGGCCAAGTCTGCAGTGGCTTCTGATACAATTGAAGAAAGTGAGGAAAATGAA GAATCTGATCCCGTCAACCCTTCAGGAATCCGAGCTAGCGATTTCGAATACTTGTTGTCGATGGCCATTTCGACATTGACATTCGAGAAAGTGCAGAAGC TGCTTGAAGACAGGGACCGGTTCAACGGAGAGGTCGATACACTAAGGAAGATGTCGGTGAAGGACTTGTGGATGCATGATCTCGACGCTTTCGAGAAGCA GCTCGATGAGCTTGAAGCACAAGAGGAATTGGATAGGAAGCTGAAGCCGAAAAGTAAACAGACACGTGTTGTCAATGCTCCTAAGCCTAGGAACAGAGCG AAACCTGCCCAGAAACCGAAAAGCGTAGAAGAAGATATGGAATCAAAGCTCCAACTTTCCTCCACTAGTTCAGCAATGGAAACTAATGAACAGCCAGTTT TGTCAGAACCTGTTCCAGCTGCGAAACAAAAGGCAAAGCCAGCAGCTACGAAGAAAGCTCCTGCGAAAAAGGGAAAACAAGCAGCTCTGGTTGACAGTGA CGACGATGAAGTGGAGTCGTTGAAAGACCGCCTGAAAGCTTACAAGCTCGACGATTCTTCACCGGAGAACTCAGCAGAAACAAAGCAAGCGCCAAAGAAA AGAGGCGGAGCAGCAGCAAAGAAAGTGATGATAGACCTCGAGGACGACAATTCTGACGAAGAAGTGGCTGCTGTGCCTGCTGCCCCGGCGAAGAAGGGTG GTAGAAAGCCAGCAGCGCCAAAAGCAGCTGCAGCTGCAAAGGCGCCGGCAGCAAAGAAGAGAGGTGCAGCGGCGGGAAAACAGAAGCTGATACCGGAGAT GCTGAAGCCGGCAGAGGGAGAAGGGATATCGCCGGAGAAGAAGGTGAGGAAGATGAGGGAGTCTCCTTTCAACAAGAAGAGTGGTTCCGTGCTGGCCAAG GGAGGAGTATCTACGTCGTCGCTGAGTGGAATCAATGAAATCTCACCGGCGTCGGAAATGACTGGACAGGACATGGCTATGCCGGCGAGGGCTCGGCCGC AGAGGAACCGGAAGCCGACTACTACGTATGTGTTGAGCGACTCTGATGAGGACCACAATGAGGATTCTGACTTCGGCGGCGAGTAA
AA sequence Show only first row Show all	>Lus10019720 pacid=23139293 polypeptide=Lus10019720 locus=Lus10019720.g ID=Lus10019720.BGIv1.0 annot-version=v1.0 MVASKKAPLMTSSSANVGADPSPLDGQQKTIEEMYQKKTQLEHILLRPDTYIGSIEKHTQMLWVYEDGKMVNRSVTYVPGLYKIFDEILVNAADNKQRDP KMNSLKVSIDVENNLVSVYNNGDGVPVEVHKEEGVYVPELIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFSTEFVIETADGKRLKKYKQVFTNNMGT KSEPEISKCMASENWTKVTFKPDLDKFNMTHLEEDVVALMKKRVLDMAGCLGKGVKVELNGNHIPVKSFQDYVNLYLDSTSENGVRRMSFYEKCGDRWEY CISITEGQFQQVSFVNSIATIKGGTHVDCVTNQITSYVTEVVNKKHKNAHLKAHNVKNYLWVFVNALIDNPAFDSQTKETLTLRQSSFGSSCQVSEDILK KVVKSEIVENLLNWAQFKQQKELKKTDGSKTSRINVPKLEDANEAGGKNSEKCTLILTEGDSAKGLAVSGLSVVGRDYYGVFPLRGKLLNVREATVKQLN ENKEIQYLKKILGLRQDKTYEDVKSLRYGHMMIMTDQDHDGSHIKGLLINFIHSFWPSLLRVPSFVVEFITPIVKATSKRGQVLSFYTMPEYKTWSDNLG TAKNNWSIKYYKGLGTSTDKEGKEYFSDLDKHKKDFMWVDDNDGNAIELAFSKKKIEARKDWIRQHEPGTHLDQADKLIKYSDFINKELILFSVADLQRS IPSMVDGLKPGQRKILFAAFKKNLVKELKLSQFIGYVSEQSAYHHGEQSLNSTIVGMAQNFVGSNNINLFVPAGNFGTRASGGKNAASARYIHTRLSLIT RFLYPKDDDCILDYLEDDGQSIEPTWYMPIIPMALVNGSEGIGTGWSTFVPNYNPRDIVANIRRLLNEEMMEPMEPWYKGFRGTIVRGVSKESGVTYSCN GLIDEVDETTIKVTELPIRTWTDNFREYLKSVTEGLKDESGNAPKDPLIKGYHEQGDDNEFEFTITLSEEKVQLARTEGLLKKFKLTSSISTTNMHLFDP SGKIKKYDNPEQVIEEFFHLRLVYYDKRKKTKLAALELELLRLENKVRFILAVVNGEIIVNNRKRADLIQELHQKGFTPMPIKAKSAVASDTIEESEENE ESDPVNPSGIRASDFEYLLSMAISTLTFEKVQKLLEDRDRFNGEVDTLRKMSVKDLWMHDLDAFEKQLDELEAQEELDRKLKPKSKQTRVVNAPKPRNRA KPAQKPKSVEEDMESKLQLSSTSSAMETNEQPVLSEPVPAAKQKAKPAATKKAPAKKGKQAALVDSDDDEVESLKDRLKAYKLDDSSPENSAETKQAPKK RGGAAAKKVMIDLEDDNSDEEVAAVPAAPAKKGGRKPAAPKAAAAAKAPAAKKRGAAAGKQKLIPEMLKPAEGEGISPEKKVRKMRESPFNKKSGSVLAK GGVSTSSLSGINEISPASEMTGQDMAMPARARPQRNRKPTTTYVLSDSDEDHNEDSDFGGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Lus10019720 [exp]	0	1
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Lus10033979 [exp]	1.0	0.9882
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10026024 [exp]	1.4	0.9849
AT5G27550			P-loop containing nucleoside t...		Lus10029914 [exp]	3.2	0.9810
AT3G10310			P-loop nucleoside triphosphate...		Lus10042045 [exp]	3.5	0.9832
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10017715 [exp]	3.5	0.9841
AT3G52110			unknown protein		Lus10039611 [exp]	4.2	0.9737
AT3G01710			TPX2 (targeting protein for Xk...		Lus10014571 [exp]	4.6	0.9629
AT5G04885			Glycosyl hydrolase family prot...		Lus10033393 [exp]	4.7	0.9626
AT1G63640			P-loop nucleoside triphosphate...		Lus10002007 [exp]	5.7	0.9583
AT5G15510			TPX2 (targeting protein for Xk...		Lus10030650 [exp]	5.8	0.9664

Compare expression of checked genes

Lus10019720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.