Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02645 107 / 2e-24 Plant protein of unknown function (DUF247) (.1) AT3G50120 76 / 2e-14 Plant protein of unknown function (DUF247) (.1) AT3G50130 75 / 7e-14 Plant protein of unknown function (DUF247) (.1) AT3G50170 74 / 1e-13 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50180 72 / 5e-13 Plant protein of unknown function (DUF247) (.1) AT3G47250 71 / 2e-12 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT3G50140 70 / 3e-12 Plant protein of unknown function (DUF247) (.1) AT4G31980 67 / 2e-11 unknown protein AT3G50150 67 / 3e-11 Plant protein of unknown function (DUF247) (.1) AT3G47210 65 / 8e-11 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016396 [exp] 1044 / 0 AT3G02645 111 / 1e-25 Plant protein of unknown function (DUF247) (.1) Lus10022538 [exp] 180 / 5e-49 AT3G02645 86 / 2e-17 Plant protein of unknown function (DUF247) (.1) Lus10031159 [exp] 153 / 1e-39 AT3G02645 175 / 2e-48 Plant protein of unknown function (DUF247) (.1) Lus10026964 [exp] 152 / 1e-39 AT3G02645 118 / 3e-28 Plant protein of unknown function (DUF247) (.1) Lus10009504 [exp] 149 / 2e-38 AT3G02645 196 / 3e-56 Plant protein of unknown function (DUF247) (.1) Lus10023185 [exp] 102 / 1e-22 AT3G02645 378 / 1e-125 Plant protein of unknown function (DUF247) (.1) Lus10015084 [exp] 99 / 2e-21 AT3G02645 382 / 4e-127 Plant protein of unknown function (DUF247) (.1) Lus10033668 [exp] 95 / 4e-20 AT3G02645 165 / 8e-45 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 77 / 1e-14 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G085300 [exp] 140 / 6e-35 AT3G02645 519 / 2e-180 Plant protein of unknown function (DUF247) (.1) Potri.001G337800 [exp] 132 / 2e-32 AT3G02645 449 / 4e-153 Plant protein of unknown function (DUF247) (.1) Potri.017G062900 [exp] 132 / 2e-32 AT3G02645 427 / 8e-145 Plant protein of unknown function (DUF247) (.1) Potri.001G337900 [exp] 132 / 2e-32 AT3G02645 465 / 2e-159 Plant protein of unknown function (DUF247) (.1) Potri.003G024100 [exp] 128 / 5e-31 AT3G02645 441 / 8e-150 Plant protein of unknown function (DUF247) (.1) Potri.017G124100 [exp] 127 / 6e-31 AT3G02645 474 / 7e-163 Plant protein of unknown function (DUF247) (.1) Potri.001G205100 [exp] 124 / 1e-29 AT3G02645 458 / 7e-157 Plant protein of unknown function (DUF247) (.1) Potri.003G205900 [exp] 104 / 3e-23 AT3G02645 332 / 2e-107 Plant protein of unknown function (DUF247) (.1) Potri.007G132300 [exp] 76 / 2e-14 AT2G28580 221 / 1e-65 Plant protein of unknown function (DUF247) (.1) Potri.003G206201 [exp] 74 / 1e-13 AT4G31980 281 / 7e-88 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10019721 pacid=23139325 polypeptide=Lus10019721 locus=Lus10019721.g ID=Lus10019721.BGIv1.0 annot-version=v1.0 ATGGCTGCCACCACATCCTCTCCTTCCCCGCCCTCAATCCTCACCCCAGACTTCACCGACGAGAAATGGCGGGTACAGATCAGAGACAACGTCAAGCTCG ACTTAGAAACCATCATCCAGAGCCTCCTCTGCGTTTTCCAAGTCCCCGACTCTCTCAAACTCACCAAACCCGAAGCCTACTCTCCTCAGCTCTTTGCTCT AGGACCTTTCCACCATTTCCGTCCAGAGCTTTACCAGATCGAGCCGCTAAAGCTAGCCATCTCCAAACGAGCTCTCGAGAGGTTCAACCTCCCCGGATTC GACGACTTCATCGCCTTACTCTCCCCTGCTCTGCCTCGCATCCAGGCCTACTACGGCCGACACCTCGACCTCAACGACAAAACCCTAGCTTGGATCATTG CCATTGACGGACTCTTCTTCATCGAGATTCTCCATAACGAGGAGATGCTGCTCTCTTCCTCCGTTCCTTACTTCTTCGATTCGTCCAAGCGGAAGCTCTC CCCTCACGCGATCCTCAACGATTTGGTGCTTCTTGAGAATCAGATTCCTCTGTTCTTGCTGGCGGAGGTTCTGTCAAACGACGATCGAGCGATTTCGGAA GAGTTCGCATCGAAATTGGACTCGATCTGCCGATTTCTATCTCCACTGAAGCTTCCCGATGAGTTCCCTCCGTATGTAAGGCGGCGGCATTTACTCGATC GGCTCTACCTCCTCATTATCTGGAGAGAGCAGATCGAGACGAAGCCGATCGTGATTGAGGCTGACGGAGAGTTCCACGGGCAGGTCAACCGTAGCGTCGA CGTTCGCGCTCCGACTTCGGTAGGGATTCTGCAGAACATCGCCGCCGGGATGTTGAAGAAAGTCGAAGATGCGCAGATTAATGCTGAAGCTGCAGGGGGA TCTGAAAACGTGAGCGTGATGATTGAGACGGTGAATTTCCAAGATCCGGAACTATCTGGATCGGTGGCGCTTGCGAAGAGGAGGATTCAGGGGATGACGA AAGCGGCGACCTTTCGGAGAAAGGACATGGAGAGCATAGTGGCGACAGTGGAGAATCAAGGAGAGGATGGAGTTGGATTTGTCTTCGCTGACGCGGCGAA AGTGAGGATGGAACATAGAATGACGGAGGCGGCGGCGGCTGGTGGAGGCGGTGGAGGGAATGATCGGAGCGACAATTTTGCAGTGAAGTTTCTGAGGAAA GTGGCGTCGGCTGAAATTGGGCCGGATGAAAATGTTACTCGCGGAGTAGAGGCATTTGCTGAAGGACAAGGGAAACTACCAATAACAGGGATATTCCACG TGTTCACAATGCTGAACAAAGTCCTAGAAGAAGACCGGTGCCTAGTCCCATCAGCCACCTACCTCAAAAAAGTCAACGTCAAAATCTCCCGCACACCCAA CGGCGGCGGCGGACTCAGCGCCATCCACTTCGACCGCCGCTCCAAAACCCTCTACCTCCCGCCATTCACCTGGTCCCCCAACGCCGAGGTGGTCCTCCGA AACCTCGTAGCCTACGAGGCCACCGCCAAGTCAAACTCCCTCAACCTCACCCGCTACACCGAGCTCATGCCCGGCCTCGTCCGCACTTCCGACGACGTCC GCCTCCTAAAGGTGGCAGGCGTCCTCGAGAAGTGCGTGGACGATGCCACGTTGGTGGAGATGTTCGGAGGAATGGGGCTGAACACGAGCTACCCGAAGGA CTGGACGATACTGGACCCGAGCGTGGCCGGGATTAACGAGTTCTACAACAATAAGGTGACGATATTGGTTTCGAGGCTTTTTAAAAAGTACGCCAAGGTG ACCATCAAGGTGCTGGTGTTGGTCGCCGGGGTGATATTGGTGGTGGTGATTTTTATACAGGCGTTTTGTAGTGTTTATCGGTGTAATAACGGTAGTGGGT TGCATCGAGTTCTTGGTGGTGGTGGTGGTGCATTGGGTTCTGTTTTGTTTGGTGATGCATGA
AA sequence Show only first row Show all	>Lus10019721 pacid=23139325 polypeptide=Lus10019721 locus=Lus10019721.g ID=Lus10019721.BGIv1.0 annot-version=v1.0 MAATTSSPSPPSILTPDFTDEKWRVQIRDNVKLDLETIIQSLLCVFQVPDSLKLTKPEAYSPQLFALGPFHHFRPELYQIEPLKLAISKRALERFNLPGF DDFIALLSPALPRIQAYYGRHLDLNDKTLAWIIAIDGLFFIEILHNEEMLLSSSVPYFFDSSKRKLSPHAILNDLVLLENQIPLFLLAEVLSNDDRAISE EFASKLDSICRFLSPLKLPDEFPPYVRRRHLLDRLYLLIIWREQIETKPIVIEADGEFHGQVNRSVDVRAPTSVGILQNIAAGMLKKVEDAQINAEAAGG SENVSVMIETVNFQDPELSGSVALAKRRIQGMTKAATFRRKDMESIVATVENQGEDGVGFVFADAAKVRMEHRMTEAAAAGGGGGGNDRSDNFAVKFLRK VASAEIGPDENVTRGVEAFAEGQGKLPITGIFHVFTMLNKVLEEDRCLVPSATYLKKVNVKISRTPNGGGGLSAIHFDRRSKTLYLPPFTWSPNAEVVLR NLVAYEATAKSNSLNLTRYTELMPGLVRTSDDVRLLKVAGVLEKCVDDATLVEMFGGMGLNTSYPKDWTILDPSVAGINEFYNNKVTILVSRLFKKYAKV TIKVLVLVAGVILVVVIFIQAFCSVYRCNNGSGLHRVLGGGGGALGSVLFGDA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02645			Plant protein of unknown funct...		Lus10019721 [exp]	0	1
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10016388 [exp]	1.4	0.9553
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10033875 [exp]	5.7	0.9274
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10029252 [exp]	6.0	0.9428
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10021505 [exp]	7.3	0.9217
AT4G27870			Vacuolar iron transporter (VIT...		Lus10022771 [exp]	8.9	0.9262
AT2G18150			Peroxidase superfamily protein...		Lus10028337 [exp]	11.6	0.9296
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10033327 [exp]	13.5	0.9130
AT1G78780			pathogenesis-related family pr...		Lus10039018 [exp]	14.1	0.9193
AT2G21100			Disease resistance-responsive ...		Lus10025064 [exp]	14.5	0.9185
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028897 [exp]	15.1	0.9262

Compare expression of checked genes

Lus10019721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.