Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72300 1123 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G53890 819 / 0 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT2G02220 753 / 0 ATPSKR1 phytosulfokin receptor 1 (.1) AT1G17250 594 / 0 AtRLP3 receptor like protein 3 (.1) AT1G17240 590 / 0 AtRLP2 receptor like protein 2 (.1) AT3G13380 487 / 2e-153 BRL3 BRI1-like 3 (.1) AT5G07280 486 / 8e-153 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G01950 464 / 5e-145 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT1G55610 457 / 5e-142 BRL1 BRI1 like (.1.2) AT4G20140 449 / 2e-138 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016395 [exp] 1964 / 0 AT1G72300 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10009213 [exp] 801 / 0 AT5G53890 1258 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10005403 [exp] 789 / 0 AT5G53890 1248 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10033533 [exp] 468 / 7e-146 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038726 [exp] 461 / 2e-143 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10020835 [exp] 460 / 6e-143 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038875 [exp] 459 / 5e-142 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10006817 [exp] 456 / 2e-141 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10039132 [exp] 452 / 2e-140 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G161000 [exp] 1301 / 0 AT1G72300 1199 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G074000 [exp] 1292 / 0 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G116900 [exp] 837 / 0 AT5G53890 1279 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.001G398500 [exp] 823 / 0 AT5G53890 1268 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.008G144700 [exp] 789 / 0 AT2G02220 1258 / 0.0 phytosulfokin receptor 1 (.1) Potri.010G097700 [exp] 773 / 0 AT2G02220 1187 / 0.0 phytosulfokin receptor 1 (.1) Potri.015G141200 [exp] 496 / 1e-155 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.012G139000 [exp] 496 / 2e-155 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.010G101100 [exp] 486 / 3e-153 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.001G472900 [exp] 476 / 1e-148 AT1G55610 1485 / 0.0 BRI1 like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019722 pacid=23139255 polypeptide=Lus10019722 locus=Lus10019722.g ID=Lus10019722.BGIv1.0 annot-version=v1.0 ATGCCACCACTTCAAAAATTCAGCTCCTTTTTCATTGGGGTTTTCTGGGTAACCATTATTACTGTCCAGTTTCTTCAATCCCGAGCTCAAATTCCTGTCT GCAACTCAGTTGATCGATCTTCCCTTTTGTCCTTCTTCTCCAACATCTCTTCCACTTCCTCCCCACCACTCAATTGGTCGTCGCAATCGTCGTCAAATTC CGATTGCTGCAGATGGGAAGGAATTCGTTGCCACCCAATTACTGGTCGAATCACTCATCTTGAGCTTCCCTTTCGAAATCTCTTCGGAACCCTATCTCTA CCATCAAATTCAAATCTTTCCACTCTTTCTCATCTCAATCTCTCTAATAATCGTCTCTACGGCAATATCCCGACTGGATTCTTCTCCTCCTTCCCTAACC TAGAAGTTCTCGATCTCAGCTACAATCGCCTCACCGGTCAACTCCCATTCCCAGACGACGGTGATCGTATTAGTAGTGGTAGTCGAATTCAGATTGCAGA TTTCTCCAGCAATCTTTTCCATGGAGAGATATTTCTCCCAGATAAGTTTGCTTGGAATACTTTGACGAGCTTTAATGTCAGCAATAACAGCTTCGTTGGG TCGATTCCTTCAGGTTTATGCCGCACTACGACGTCGTTTTTTACTGTGCTAGACTTCTCCTTCAACGATTTCAGCGGCAGGATTCCGTATGGTTTAGGTA ACTGTTCACAATTGAAGATTCTGAGAGGTGGATTCAATAATTTGTCAGGTTTGATTCCTGATGATGTCTACACGATTGATTCGCTTGAGGAGCTTTCGTT ATCTGTCAATCACCTCTCTGGCAAAATTTCCAATCAGTTGGTCAACTTGGTTAATCTGAAAAGTCTCGAGCTTTTCTCGAATCAGTTAAATGGTTCAATC CCTCAAGACATGGGGAAGTTGTCAAAGTTGGAGAATTTGCAGCTTCATGTGAATAATCTGACTGGTTCGTTGCCTTCGTCGCTGTCGAATTGTACGAATT TGGTAACTTTGATCTTGAGAGTCAACTCATTGGCAGGTCGGATTGATGAGTTCAACTTCTCCAAGCTCCAGAGACTGACGACGCTTGATCTTGGTAACAA TTTCTTCACAGGCAACCTGCCTTCGAGTCTTTTCTCATGTACCTCGTTGATTGCGCTTCGATTCGCGAGTAATCAGTTATCGGGACAAGTATCGGCCAGG ATTCAGGCCTTGCAGTCTCTTGCTTTCCTTTCTGTATCCAACAACCAGTTCAGTAATTTCACCGGTGCGTTGCGAATATTCACTGGCTGTAAGAATTTGT CTACTTTGATTCTGTCCAAGAACTTCTACTATGAGGCCATGCCACAGGAGATCGAGAATAATGTAGGAATAGACACAAATGGTTTCCATAGCATCAGAAT TTTGGCCTTGGGGGGTTGTAAGTTGACTGGTCAGATACCGGCTTGGCTAGCTAACATCAAGACCTTGGGAGTGATTGATTTGTCCTTTAACCAATTCAAC GGCTCGATTCCTGGTTGGTTCGGTAGTTTACCGAGTCTCTTCTACATGGACTTGTCGAATAATCGACTCTCGGGTGATCTCCCCGTGGAGATCACTGATC TACAAGCGCTTGTATCGCCTCAACTCGATCATTCGGTCGACAAGACTCATTTGGAGCTGCCCGTGTTTGTTAATCCGAATAACGTAACGATTACGAATCT GCAGTATAACCAGCTTGCCAGCCTCCCACCAGCTATATATTTAGGTAACAACAGCCTCAGTGGGAGTATCCCTGAAGAGATTGGACACCTCAAGGGCCTT CATGTTCTCGATCTTAGCTCGAACAACTTCTCGATGAATATCCCGGATGAGATATTCAATCTCACTAATCTAGAGAACTTGGATCTCTCCGGGAATCAGC TTACCGGACAGATCCCTGTGGGATTAAAAGGCCTGCATTTCTTGTCATCGTTCAATGTCGCGGGGAACAACTTGCAAGGCTCGATCCCTGCTGGCGGTCA GTTTGATACATTCCCTAGCTCGAGCTTTGCAGGGAATCCGGGATTGTGTGGTGCGGTTTTGCAGCGCTCTTGCCCCGGTTCAGCTGATGATAATGTGCAT CCGAGTTCCTCGAAAAGAAAGAAAGCGAGGAGTATGAATGCGAAAGTTGTGGTTGGACTTGTTCTCGGAATCTGTTTCGGATCAGGCTTGTTGATTGCTG TGATGGCACTGTGGATACTCTCCAAGAGAAGGATCATTCCGGGAGGAGATACCGATAAGATCGAAATGGACGGATATTCCAGCAATTCCTATCTGAGAAT CAGTCCAGATGGCGATCGAGATACGAGCCTAGTCATGTTGTTTCCGAACAATATCGTCAACGAGGTGAAAGATCTGACGATTATCGAGCTCTTGAAGGCT ACCGACAACTTCAGCCAAGCGAATATCGTTGGATGTGGAGGTTTCGGATTGGTCTACAAGGCGACATTAGCAAACGGGACGAAACTAGCCGTGAAGAAGC TCTCAGGAGATTTCGGATTAATGGAGAGAGAGTTCAAGGCCGAGATCGAAGCACTTTCGACAGCGCAACACGAGAATCTGGTCTCGTTGCAAGGATATTG CGTCCACAACGGATTCCGGCTACTAATCTATTCCTACATGGAGAACGGAAGCCTCGATTACTGGCTACACGAAAAAACCGAAGGAGCTTCCCAGCTCGAC TGGCCGACTCGATTGAAAATAGCGAAAGGTGCGAGTATCGGATTAGCTTACATGCACCAAGTATGCGAGCCGCACATCGTGCACCGTGATATAAAGTCGA GCAACATCCTCCTCGACGAGAAATTCGAAGCTCATGTTGCCGATTTCGGGCTGGCAAGGCTAATTCGTCCTTACTGCACGCACGTAACAACCGAGCTGGT CGGTACATTGGGGTACATTCCGCCCGAATACGGTCAGGCGTGGATAGCCACCTTGAGAGGCGACGTGTACAGCTTTGGAGTCGTGATGCTCGAGTTGCTG AGCGGGAAGAGACCTGTGGAAGTGTTCAAGCCGAAGATGTCGAGGGAGCTTGTCGCGTGGGTTTTCCAGATGAGGAGCGAAGGGAAGCAAGAACAGATAT TCGACCCGGTCCTTCGAGACAAAGGGTACAAGGACGAGATGCTAAAAATGCTCGACGTTGCGTGTATGTGTGTTAGCCATAACCCGAGGAAGAGACCCGG GATACAAGAGGTTGTAGACTGTCTGAAGAAGTTAGAAGGATTCCCGCAGAAAGAAGAAGGATTGATTGAATGA
AA sequence Show only first row Show all	>Lus10019722 pacid=23139255 polypeptide=Lus10019722 locus=Lus10019722.g ID=Lus10019722.BGIv1.0 annot-version=v1.0 MPPLQKFSSFFIGVFWVTIITVQFLQSRAQIPVCNSVDRSSLLSFFSNISSTSSPPLNWSSQSSSNSDCCRWEGIRCHPITGRITHLELPFRNLFGTLSL PSNSNLSTLSHLNLSNNRLYGNIPTGFFSSFPNLEVLDLSYNRLTGQLPFPDDGDRISSGSRIQIADFSSNLFHGEIFLPDKFAWNTLTSFNVSNNSFVG SIPSGLCRTTTSFFTVLDFSFNDFSGRIPYGLGNCSQLKILRGGFNNLSGLIPDDVYTIDSLEELSLSVNHLSGKISNQLVNLVNLKSLELFSNQLNGSI PQDMGKLSKLENLQLHVNNLTGSLPSSLSNCTNLVTLILRVNSLAGRIDEFNFSKLQRLTTLDLGNNFFTGNLPSSLFSCTSLIALRFASNQLSGQVSAR IQALQSLAFLSVSNNQFSNFTGALRIFTGCKNLSTLILSKNFYYEAMPQEIENNVGIDTNGFHSIRILALGGCKLTGQIPAWLANIKTLGVIDLSFNQFN GSIPGWFGSLPSLFYMDLSNNRLSGDLPVEITDLQALVSPQLDHSVDKTHLELPVFVNPNNVTITNLQYNQLASLPPAIYLGNNSLSGSIPEEIGHLKGL HVLDLSSNNFSMNIPDEIFNLTNLENLDLSGNQLTGQIPVGLKGLHFLSSFNVAGNNLQGSIPAGGQFDTFPSSSFAGNPGLCGAVLQRSCPGSADDNVH PSSSKRKKARSMNAKVVVGLVLGICFGSGLLIAVMALWILSKRRIIPGGDTDKIEMDGYSSNSYLRISPDGDRDTSLVMLFPNNIVNEVKDLTIIELLKA TDNFSQANIVGCGGFGLVYKATLANGTKLAVKKLSGDFGLMEREFKAEIEALSTAQHENLVSLQGYCVHNGFRLLIYSYMENGSLDYWLHEKTEGASQLD WPTRLKIAKGASIGLAYMHQVCEPHIVHRDIKSSNILLDEKFEAHVADFGLARLIRPYCTHVTTELVGTLGYIPPEYGQAWIATLRGDVYSFGVVMLELL SGKRPVEVFKPKMSRELVAWVFQMRSEGKQEQIFDPVLRDKGYKDEMLKMLDVACMCVSHNPRKRPGIQEVVDCLKKLEGFPQKEEGLIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72300			Leucine-rich receptor-like pro...		Lus10019722 [exp]	0	1
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10039644 [exp]	2.8	0.9067
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10006640 [exp]	4.5	0.8955
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10002687 [exp]	7.7	0.9088
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10038364 [exp]	11.0	0.8825
					Lus10031340 [exp]	13.0	0.8807
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10008230 [exp]	16.8	0.8905
AT2G20650			RING/U-box superfamily protein...		Lus10018613 [exp]	17.6	0.8993
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10016633 [exp]	18.0	0.8943
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10030205 [exp]	19.3	0.8819
AT1G52190			Major facilitator superfamily ...		Lus10038614 [exp]	21.5	0.8871

Compare expression of checked genes

Lus10019722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.