Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08030 319 / 2e-108 Protein of unknown function, DUF642 (.1.2) AT2G41810 265 / 4e-87 Protein of unknown function, DUF642 (.1) AT2G41800 251 / 1e-81 Protein of unknown function, DUF642 (.1) AT5G25460 236 / 1e-75 Protein of unknown function, DUF642 (.1) AT4G32460 236 / 1e-75 Protein of unknown function, DUF642 (.1.2) AT5G11420 234 / 3e-75 Protein of unknown function, DUF642 (.1) AT1G80240 229 / 4e-73 Protein of unknown function, DUF642 (.1) AT1G29980 200 / 1e-61 Protein of unknown function, DUF642 (.1.2) AT2G34510 199 / 3e-61 Protein of unknown function, DUF642 (.1) AT5G14150 82 / 2e-17 Protein of unknown function, DUF642 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016394 [exp] 429 / 2e-151 AT3G08030 469 / 2e-166 Protein of unknown function, DUF642 (.1.2) Lus10016393 [exp] 402 / 1e-140 AT3G08030 490 / 1e-174 Protein of unknown function, DUF642 (.1.2) Lus10029501 [exp] 355 / 2e-122 AT3G08030 537 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10039602 [exp] 352 / 3e-121 AT3G08030 530 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10029502 [exp] 343 / 2e-117 AT3G08030 475 / 1e-168 Protein of unknown function, DUF642 (.1.2) Lus10029503 [exp] 338 / 3e-116 AT3G08030 465 / 4e-166 Protein of unknown function, DUF642 (.1.2) Lus10019727 [exp] 332 / 4e-114 AT3G08030 392 / 3e-137 Protein of unknown function, DUF642 (.1.2) Lus10013112 [exp] 249 / 1e-80 AT5G11420 606 / 0.0 Protein of unknown function, DUF642 (.1) Lus10008080 [exp] 248 / 2e-80 AT5G11420 604 / 0.0 Protein of unknown function, DUF642 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G058800 [exp] 337 / 2e-115 AT3G08030 498 / 9e-178 Protein of unknown function, DUF642 (.1.2) Potri.001G263900 [exp] 331 / 4e-113 AT3G08030 515 / 0.0 Protein of unknown function, DUF642 (.1.2) Potri.006G050300 [exp] 293 / 7e-98 AT2G41810 530 / 0.0 Protein of unknown function, DUF642 (.1) Potri.016G056100 [exp] 288 / 4e-96 AT2G41810 520 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050400 [exp] 283 / 2e-94 AT2G41810 521 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G250100 [exp] 247 / 6e-80 AT5G11420 598 / 0.0 Protein of unknown function, DUF642 (.1) Potri.018G031100 [exp] 243 / 8e-78 AT5G11420 600 / 0.0 Protein of unknown function, DUF642 (.1) Potri.003G059800 [exp] 231 / 1e-73 AT5G25460 513 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G174400 [exp] 227 / 7e-72 AT5G25460 507 / 0.0 Protein of unknown function, DUF642 (.1) Potri.011G087500 [exp] 205 / 3e-63 AT1G29980 578 / 0.0 Protein of unknown function, DUF642 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF04862 [flax] [poplar] DUF642 Protein of unknown function (DUF642)
Representative CDS sequence Show only first row Show all	>Lus10019723 pacid=23139243 polypeptide=Lus10019723 locus=Lus10019723.g ID=Lus10019723.BGIv1.0 annot-version=v1.0 ATGGCGTCATCAAGTCTTGTACTGGCAAACTTGCTTCTGCTATGCTTCCATGGATATGCCGCCGCCATTGGAGGTGGAGGCCATCACTTCGATGGCCTAC TGAACAACGGCAACTTCGAGCAGGCTCCAAAGCCAAGCAACATGGTGAAAACGGTTGTAAAAGGAAAGAACTCGATTCCGGGATGGCAAATCGACGGCCT AGTTGAGTTCATCTCGGGCGGACCCCAGCCAGGCGGGATGTTCTTTACCGCGGCACACGGGGTCCACGCGGTCAGGCTAGGGAACGAAGCCTCCATTTCG CAGACCATACCAAACCTTAAACCCGGCTCGCTCTACGTGCTCTCTTTTGCGGCGTCGAGGACGTGCGCGCAGAACGAGGTGCTCCGGGTTTCGGTCCCCG GTCAAACTGGGGACCTGCCGCTGCAGACGCTGTACAGCAGCAACGGAGGGGACACGTACGCGTGGGGGTTTCGAGGCAAGGGGAGAGCGGTTCATACGGT TGTTTTCAGTAACCCCGGCGTGGATGACGATCCGGCTTGTGGTCCGCTCATTGATGCCGTTGCCATAAGGGAGCTCTTCCCTCCTTTCCCCACTAAAGAT AACTTGGTGAAGAACCCCGGGTTCGAGGAAGGCCCGCGAAGGCCACAACTCAATAGCTCAAACGGCATCCTCCTCCCGCCAAACCAAGAAGACGCGGTCT CCCCACTACCCGGGTGGATCGTCGAGTCCTTGAAGGCCGTCAAGTACATAGACTCCAACCACTACAACGTCCCCTTCGGGAAATCGGCGGGGGGGCGCCG GGGGGCCGGTCAAGTACATAGACTCCAACCACTACAACGTCCCCTTCGGGAAATCGGCGGTCGAGCTCGTGGCCGGAAGAGAGAGCGCCATCGCTCAGAT CATCCGCACCGTTGCTAA
AA sequence Show only first row Show all	>Lus10019723 pacid=23139243 polypeptide=Lus10019723 locus=Lus10019723.g ID=Lus10019723.BGIv1.0 annot-version=v1.0 MASSSLVLANLLLLCFHGYAAAIGGGGHHFDGLLNNGNFEQAPKPSNMVKTVVKGKNSIPGWQIDGLVEFISGGPQPGGMFFTAAHGVHAVRLGNEASIS QTIPNLKPGSLYVLSFAASRTCAQNEVLRVSVPGQTGDLPLQTLYSSNGGDTYAWGFRGKGRAVHTVVFSNPGVDDDPACGPLIDAVAIRELFPPFPTKD NLVKNPGFEEGPRRPQLNSSNGILLPPNQEDAVSPLPGWIVESLKAVKYIDSNHYNVPFGKSAGGRRGAGQVHRLQPLQRPLREIGGRARGRKRERHRSD HPHRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08030			Protein of unknown function, D...		Lus10019723 [exp]	0	1
AT5G11420			Protein of unknown function, D...		Lus10019724 [exp]	1.0	0.9966
					Lus10003802 [exp]	2.0	0.9762
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10038904 [exp]	2.4	0.9842
AT2G18670			RING/U-box superfamily protein...		Lus10019979 [exp]	3.0	0.9808
AT5G24600			Protein of unknown function, D...		Lus10013947 [exp]	4.2	0.9737
AT3G08030			Protein of unknown function, D...		Lus10016394 [exp]	4.7	0.9671
					Lus10026740 [exp]	5.3	0.9732
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10034835 [exp]	5.5	0.9757
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10031333 [exp]	5.7	0.9730
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Lus10018926 [exp]	7.7	0.9687

Compare expression of checked genes

Lus10019723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.