Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11420 87 / 4e-22 Protein of unknown function, DUF642 (.1) AT4G32460 87 / 4e-22 Protein of unknown function, DUF642 (.1.2) AT5G25460 86 / 1e-21 Protein of unknown function, DUF642 (.1) AT3G08030 82 / 2e-20 Protein of unknown function, DUF642 (.1.2) AT2G41800 77 / 1e-18 Protein of unknown function, DUF642 (.1) AT2G41810 72 / 1e-16 Protein of unknown function, DUF642 (.1) AT1G80240 63 / 2e-13 Protein of unknown function, DUF642 (.1) AT2G34510 59 / 8e-12 Protein of unknown function, DUF642 (.1) AT1G29980 57 / 2e-11 Protein of unknown function, DUF642 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016394 [exp] 139 / 2e-41 AT3G08030 469 / 2e-166 Protein of unknown function, DUF642 (.1.2) Lus10016393 [exp] 123 / 1e-35 AT3G08030 490 / 1e-174 Protein of unknown function, DUF642 (.1.2) Lus10019727 [exp] 109 / 1e-30 AT3G08030 392 / 3e-137 Protein of unknown function, DUF642 (.1.2) Lus10029503 [exp] 108 / 2e-30 AT3G08030 465 / 4e-166 Protein of unknown function, DUF642 (.1.2) Lus10029501 [exp] 100 / 4e-27 AT3G08030 537 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10039602 [exp] 100 / 4e-27 AT3G08030 530 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10029502 [exp] 99 / 2e-26 AT3G08030 475 / 1e-168 Protein of unknown function, DUF642 (.1.2) Lus10013112 [exp] 85 / 4e-21 AT5G11420 606 / 0.0 Protein of unknown function, DUF642 (.1) Lus10008080 [exp] 85 / 4e-21 AT5G11420 604 / 0.0 Protein of unknown function, DUF642 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G263900 [exp] 105 / 9e-29 AT3G08030 515 / 0.0 Protein of unknown function, DUF642 (.1.2) Potri.009G058800 [exp] 97 / 5e-26 AT3G08030 498 / 9e-178 Protein of unknown function, DUF642 (.1.2) Potri.018G031100 [exp] 89 / 1e-22 AT5G11420 600 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G250100 [exp] 88 / 2e-22 AT5G11420 598 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050400 [exp] 85 / 3e-21 AT2G41810 521 / 0.0 Protein of unknown function, DUF642 (.1) Potri.016G056100 [exp] 84 / 5e-21 AT2G41810 520 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050300 [exp] 83 / 1e-20 AT2G41810 530 / 0.0 Protein of unknown function, DUF642 (.1) Potri.003G059800 [exp] 72 / 9e-17 AT5G25460 513 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G174400 [exp] 72 / 1e-16 AT5G25460 507 / 0.0 Protein of unknown function, DUF642 (.1) Potri.011G087500 [exp] 61 / 2e-12 AT1G29980 578 / 0.0 Protein of unknown function, DUF642 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF04862 [flax] [poplar] DUF642 Protein of unknown function (DUF642)
Representative CDS sequence Show only first row Show all	>Lus10019724 pacid=23139318 polypeptide=Lus10019724 locus=Lus10019724.g ID=Lus10019724.BGIv1.0 annot-version=v1.0 ATGGCCGTGGTGGCATTCGCTGCCAAGGAGACATTCACCGTCCCGTTCGAGTCGAAGGGGAAAGGGGAGTTCAAGACGGTGTCGTTTAAGTTCGTAGCGG TCTCGAACCGGACTAGGCTCACTTTCTTCAGCGGGCAGTATCATAACAGGAGGGATGATTTCGTCTCGTTTTGCGGGCCTGTTGTTGACCAAGTCAAAGT TGTCCCGTTGAGGGCTTGA
AA sequence Show only first row Show all	>Lus10019724 pacid=23139318 polypeptide=Lus10019724 locus=Lus10019724.g ID=Lus10019724.BGIv1.0 annot-version=v1.0 MAVVAFAAKETFTVPFESKGKGEFKTVSFKFVAVSNRTRLTFFSGQYHNRRDDFVSFCGPVVDQVKVVPLRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11420			Protein of unknown function, D...		Lus10019724 [exp]	0	1
AT3G08030			Protein of unknown function, D...		Lus10019723 [exp]	1.0	0.9966
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10038904 [exp]	2.0	0.9873
AT2G18670			RING/U-box superfamily protein...		Lus10019979 [exp]	2.4	0.9853
AT5G24600			Protein of unknown function, D...		Lus10013947 [exp]	2.4	0.9788
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10034835 [exp]	2.8	0.9817
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10031333 [exp]	4.6	0.9751
AT3G48660			Protein of unknown function (D...		Lus10003120 [exp]	6.3	0.9789
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10025493 [exp]	6.3	0.9719
					Lus10003802 [exp]	8.1	0.9666
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Lus10018926 [exp]	8.4	0.9674

Compare expression of checked genes

Lus10019724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.