Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13700 365 / 5e-122 ATPAO1, APAO polyamine oxidase 1 (.1) AT3G59050 173 / 3e-48 ATPAO3 polyamine oxidase 3 (.1) AT2G43020 156 / 4e-42 ATPAO2 polyamine oxidase 2 (.1) AT1G65840 154 / 2e-41 ATPAO4 polyamine oxidase 4 (.1) AT4G16310 124 / 1e-29 LDL3 LSD1-like 3 (.1) AT1G62830 116 / 2e-27 ATLSD1, ATSWP1, LDL1, SWP1 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) AT3G10390 114 / 8e-27 FLD FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) AT4G29720 107 / 7e-25 ATPAO5 polyamine oxidase 5 (.1) AT3G13682 93 / 6e-20 LDL2 LSD1-like2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041898 [exp] 709 / 0 AT5G13700 349 / 2e-113 polyamine oxidase 1 (.1) Lus10042168 [exp] 538 / 0 AT5G13700 337 / 4e-111 polyamine oxidase 1 (.1) Lus10042127 [exp] 442 / 1e-152 AT5G13700 320 / 5e-105 polyamine oxidase 1 (.1) Lus10039599 [exp] 373 / 6e-125 AT5G13700 693 / 0.0 polyamine oxidase 1 (.1) Lus10029495 [exp] 296 / 4e-95 AT5G13700 587 / 0.0 polyamine oxidase 1 (.1) Lus10004260 [exp] 206 / 3e-62 AT5G13700 99 / 5e-23 polyamine oxidase 1 (.1) Lus10029804 [exp] 145 / 6e-38 AT2G43020 790 / 0.0 polyamine oxidase 2 (.1) Lus10020726 [exp] 144 / 7e-38 AT2G43020 794 / 0.0 polyamine oxidase 2 (.1) Lus10005021 [exp] 128 / 4e-32 AT2G43020 720 / 0.0 polyamine oxidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G074600 [exp] 693 / 0 AT5G13700 395 / 5e-134 polyamine oxidase 1 (.1) Potri.012G079500 [exp] 553 / 0 AT5G13700 400 / 7e-136 polyamine oxidase 1 (.1) Potri.009G058200 [exp] 388 / 8e-131 AT5G13700 756 / 0.0 polyamine oxidase 1 (.1) Potri.001G263400 [exp] 387 / 2e-130 AT5G13700 734 / 0.0 polyamine oxidase 1 (.1) Potri.017G144001 [exp] 159 / 2e-43 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1) Potri.004G075800 [exp] 155 / 6e-42 AT1G65840 728 / 0.0 polyamine oxidase 4 (.1) Potri.005G207300 [exp] 144 / 8e-38 AT2G43020 820 / 0.0 polyamine oxidase 2 (.1) Potri.002G055300 [exp] 144 / 1e-37 AT2G43020 809 / 0.0 polyamine oxidase 2 (.1) Potri.011G127600 [exp] 127 / 5e-31 AT3G13682 959 / 0.0 LSD1-like2 (.1) Potri.002G013100 [exp] 110 / 1e-25 AT1G62830 964 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10019725 pacid=23139268 polypeptide=Lus10019725 locus=Lus10019725.g ID=Lus10019725.BGIv1.0 annot-version=v1.0 ATGGCAATGGCGTTCATTCTCCTCCTCCTTCCCCTTCTCTTCTCCCCATCGACGGCCGCGGATTCTCCATCCGTCATCGTCATCGGTGCCGGAATGTCTG GAATATCGGCAGCAAAGAAGCTTTACGATTCAGGAATAAAAGACATCCTCATCCTCGAAGCCACATCCAGAATCGGCGGCCGGATGTTGAAGACCGATTT CAGCGGCTACACCGTGGAAATGGGCGCCAACTGGTTCTTCAGCGGAGGGCCTGTAGCTAACCCAGTCATTGAAATGGCGAAGAATGTCAGCCTCAGATCT TACCCCAACGACTACTCCAACATCACCGCCAACACTTACAAACAAGAAGGAGGAATGTACTTGAAGAAGGAGGTTGACCAAGTTGATGAGGTGGCAGTCG CTAGAGACGACTATTGCGCGAATTTCGCCAGGATTCTGTCTCGGAAATCGAACAAGAAGGACGTCGACGTGTCCATTTTGGCCGGCCAACGCCTCTACGG AAGGCCACCATTGACGCCATTGGAAATGGTGATAGATTTCTACCACAACGACTACGAAGACGCGGAGCCACCGAAGGTGACGAGCTTGAAACACACGTAC CCTCGAACCGAGTTCGAGGAGCACGGAGAGGACCCGCATTTTGTGACCGACCCGAGAGGGTTCGGCGTTCTGGTTCAGTACCTAGCCAGCCAGATTCTCA CGAAAGGAAGCCCCGTCAGGATAAAGTTCAAAAAGGTGGCGACGGAGATAGTTTACTCTAAGAACAGTGTCAGAGTGAAAACCGAAGATGGTTCCACTTA CTCGGCGAACTACGCCGTTGTCTCTGCTAGCGTCGGTGTTCTTCAGACTGACCTCATCAAGTTCAAACCAAAACTACCGATGTGGAAAAGAATGGCGATA GCCGACATGACGATGACGATCTACACCAAAATCTTCATCAAGTTCCCCCACAAGTTCTGGCCAAGCGGGAACGGAACAGAGTTCTTCCTCTACTCCCACG TCCAGCGTGGATACTACCCGCTCTGGCAGCATCTCGAGAACGAGTATCCCGGATCGAACATCCTGATGGTGACCGTGACAGCTGATGAATCGAGGCGAGT CGAACAGCTGTCCAACGAAGCCATACAGGGGGAAGCCATGGCTGTTCTGAAGAAAATGTTCGGAGACAAGATTCCGAACCCGGTGAACATCTTGGTGCCC AGATGGGGTTCCAATAGATTCTACAAAGGGAGCTATGCCAATTGGCCGGCTAACTACGACACGGAGAAACACAATCAATTAGGGGCGCCTGTTGGTGCAG TGTATTTTACTGGAGAGCACCTAAGTGACAAGTTCATTGGATACGTGGATGGTGCTTACTTGGAAGGGATTGCAACTGCGGAAGAGTTGATAAAGTGCAT CAAGGGAGATGGATGCCAAGGTGAAAAGAACATGTCGATAGAGTAG
AA sequence Show only first row Show all	>Lus10019725 pacid=23139268 polypeptide=Lus10019725 locus=Lus10019725.g ID=Lus10019725.BGIv1.0 annot-version=v1.0 MAMAFILLLLPLLFSPSTAADSPSVIVIGAGMSGISAAKKLYDSGIKDILILEATSRIGGRMLKTDFSGYTVEMGANWFFSGGPVANPVIEMAKNVSLRS YPNDYSNITANTYKQEGGMYLKKEVDQVDEVAVARDDYCANFARILSRKSNKKDVDVSILAGQRLYGRPPLTPLEMVIDFYHNDYEDAEPPKVTSLKHTY PRTEFEEHGEDPHFVTDPRGFGVLVQYLASQILTKGSPVRIKFKKVATEIVYSKNSVRVKTEDGSTYSANYAVVSASVGVLQTDLIKFKPKLPMWKRMAI ADMTMTIYTKIFIKFPHKFWPSGNGTEFFLYSHVQRGYYPLWQHLENEYPGSNILMVTVTADESRRVEQLSNEAIQGEAMAVLKKMFGDKIPNPVNILVP RWGSNRFYKGSYANWPANYDTEKHNQLGAPVGAVYFTGEHLSDKFIGYVDGAYLEGIATAEELIKCIKGDGCQGEKNMSIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10019725 [exp]	0	1
AT5G44560		VPS2.2	SNF7 family protein (.1.2)		Lus10023396 [exp]	11.1	0.7454
AT3G07750			3'-5'-exoribonuclease family p...		Lus10001747 [exp]	20.0	0.6753
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10016665 [exp]	22.2	0.6994
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10043248 [exp]	23.1	0.6943
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10035462 [exp]	30.0	0.6269
AT1G74680			Exostosin family protein (.1)		Lus10024214 [exp]	33.2	0.6346
AT1G34030			Ribosomal protein S13/S18 fami...		Lus10043405 [exp]	33.8	0.6654
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10017031 [exp]	37.7	0.6628
AT3G26782			Tetratricopeptide repeat (TPR)...		Lus10035157 [exp]	41.6	0.6552
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Lus10024771 [exp]	60.0	0.5381

Compare expression of checked genes

Lus10019725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.