Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08030 391 / 4e-137 Protein of unknown function, DUF642 (.1.2) AT2G41800 349 / 7e-120 Protein of unknown function, DUF642 (.1) AT2G41810 337 / 8e-115 Protein of unknown function, DUF642 (.1) AT4G32460 324 / 5e-110 Protein of unknown function, DUF642 (.1.2) AT5G11420 320 / 3e-108 Protein of unknown function, DUF642 (.1) AT5G25460 318 / 1e-107 Protein of unknown function, DUF642 (.1) AT1G80240 282 / 1e-93 Protein of unknown function, DUF642 (.1) AT1G29980 254 / 1e-82 Protein of unknown function, DUF642 (.1.2) AT2G34510 251 / 5e-81 Protein of unknown function, DUF642 (.1) AT5G14150 96 / 3e-22 Protein of unknown function, DUF642 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016393 [exp] 552 / 0 AT3G08030 490 / 1e-174 Protein of unknown function, DUF642 (.1.2) Lus10016394 [exp] 502 / 7e-180 AT3G08030 469 / 2e-166 Protein of unknown function, DUF642 (.1.2) Lus10029503 [exp] 474 / 7e-170 AT3G08030 465 / 4e-166 Protein of unknown function, DUF642 (.1.2) Lus10029501 [exp] 456 / 5e-162 AT3G08030 537 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10039602 [exp] 451 / 1e-159 AT3G08030 530 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10029502 [exp] 447 / 4e-158 AT3G08030 475 / 1e-168 Protein of unknown function, DUF642 (.1.2) Lus10019723 [exp] 332 / 5e-114 AT3G08030 332 / 3e-113 Protein of unknown function, DUF642 (.1.2) Lus10013112 [exp] 326 / 1e-110 AT5G11420 606 / 0.0 Protein of unknown function, DUF642 (.1) Lus10008080 [exp] 326 / 2e-110 AT5G11420 604 / 0.0 Protein of unknown function, DUF642 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G058800 [exp] 431 / 4e-152 AT3G08030 498 / 9e-178 Protein of unknown function, DUF642 (.1.2) Potri.001G263900 [exp] 431 / 5e-152 AT3G08030 515 / 0.0 Protein of unknown function, DUF642 (.1.2) Potri.006G050300 [exp] 375 / 3e-130 AT2G41810 530 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050400 [exp] 372 / 7e-129 AT2G41810 521 / 0.0 Protein of unknown function, DUF642 (.1) Potri.016G056100 [exp] 366 / 2e-126 AT2G41810 520 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G250100 [exp] 332 / 4e-113 AT5G11420 598 / 0.0 Protein of unknown function, DUF642 (.1) Potri.018G031100 [exp] 330 / 2e-111 AT5G11420 600 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G174400 [exp] 305 / 5e-102 AT5G25460 507 / 0.0 Protein of unknown function, DUF642 (.1) Potri.003G059800 [exp] 303 / 4e-101 AT5G25460 513 / 0.0 Protein of unknown function, DUF642 (.1) Potri.011G087500 [exp] 263 / 2e-85 AT1G29980 578 / 0.0 Protein of unknown function, DUF642 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF04862 [flax] [poplar] DUF642 Protein of unknown function (DUF642)
Representative CDS sequence Show only first row Show all	>Lus10019727 pacid=23139197 polypeptide=Lus10019727 locus=Lus10019727.g ID=Lus10019727.BGIv1.0 annot-version=v1.0 ATGGACAAAACGGTAGTCAAGGGCAAGAACTCAATCCCCGGATGGGAAACCAACGGCTTGGTGGAGTTCATCTCCGGTGGACCCCAGCCGGGAGGGATGT TCTTCCCCGTGGCACACGGGATCCACGCGGTCAGGCTGGGGAACGACGCTTCCATTTCCCAGACCGTACCCAACTTGAAATCAGGATCGCTCTACGTGCT ATCCTTTGTCGAGTCAAGGACATGCGTGCAGAACGAGGTGCTCCGGGTTTCGGTACCACCAAAGCAGGCGGGAGACCTGCCGCTGCAGACACTTTACTGC AGCAACGGCGGGGACACCTATGCTTGGGGGTTCAAGGCGAGTGGGGAGGAAGCAAAGGTGGTGTTCCATAACCCGGGAGCGCAAGAGGATCCTGCTTATG GTCCTCTTGTCGACTCCGGTGCTAATAGGGAGCTCTTCCCCTCTCACCCCACCAGAGATAGCTTGGTGAAGAACCCCGGGTTCGAGGAAGGCCCGCGAAT GCCACGACACAACAACTCAAACGGAATCCTCCTCCCACCAAACCATAAAGTCTCCCCGCTCTCCGGGTGGATCATTGAGTACCTGAAGGCAGTCAAGTAT ATAGACGCCAAGCACTACAACGTCCCCTTCGGCCAATCAGCAGTCGAGCTGGTGGCCGGAAGGGACAGAGCCATCACTCAGATCATTCATACTGTCGTTA ACAAAGTGTACAGCCTCACATTCACCGTGGGAGACGGGAGGAACGAGTGCCACGGGTCCAAGACCGTGGTGGCTTTCGCGGCCAGGGAGACGTTCACCGT CCCATTCGAGTCGAAGGGGAAAGGGGAGTTCAAGACGGTGACGTTTAAGTTCACAATCTCGAACAGGACTAGGGTCACGTTCTTTAGCTCTCAGTACCAG ACCAGGAAAGATGACTTTGTTTCCCTTTGTGGTCCTGTCGTTGACCAAGCGGTGGTTCTCCCCTTTAATTAA
AA sequence Show only first row Show all	>Lus10019727 pacid=23139197 polypeptide=Lus10019727 locus=Lus10019727.g ID=Lus10019727.BGIv1.0 annot-version=v1.0 MDKTVVKGKNSIPGWETNGLVEFISGGPQPGGMFFPVAHGIHAVRLGNDASISQTVPNLKSGSLYVLSFVESRTCVQNEVLRVSVPPKQAGDLPLQTLYC SNGGDTYAWGFKASGEEAKVVFHNPGAQEDPAYGPLVDSGANRELFPSHPTRDSLVKNPGFEEGPRMPRHNNSNGILLPPNHKVSPLSGWIIEYLKAVKY IDAKHYNVPFGQSAVELVAGRDRAITQIIHTVVNKVYSLTFTVGDGRNECHGSKTVVAFAARETFTVPFESKGKGEFKTVTFKFTISNRTRVTFFSSQYQ TRKDDFVSLCGPVVDQAVVLPFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08030			Protein of unknown function, D...		Lus10019727 [exp]	0	1
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10002775 [exp]	5.1	0.9356
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040326 [exp]	5.7	0.9360
					Lus10032472 [exp]	7.5	0.9353
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10026197 [exp]	7.7	0.9282
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Lus10029859 [exp]	14.1	0.9099
AT1G49490			Leucine-rich repeat (LRR) fami...		Lus10027935 [exp]	14.3	0.9274
AT5G15430			Plant calmodulin-binding prote...		Lus10000209 [exp]	14.5	0.9223
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10012228 [exp]	15.5	0.9055
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10040287 [exp]	16.7	0.9078
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10011998 [exp]	18.8	0.9056

Compare expression of checked genes

Lus10019727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.