Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38540 400 / 3e-138 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G05320 396 / 1e-136 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT2G35660 256 / 2e-81 CTF2B, CTF2A FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3) AT4G15760 230 / 1e-71 MO1 monooxygenase 1 (.1.2) AT2G29720 228 / 9e-71 CTF2B FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G15765 134 / 2e-36 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G67030 83 / 7e-17 NPQ2, LOS6, IBS3, ATZEP, ATABA1, ABA1 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016392 [exp] 637 / 0 AT5G05320 377 / 4e-129 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10016398 [exp] 614 / 0 AT4G38540 358 / 1e-119 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034467 [exp] 546 / 0 AT4G38540 418 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034475 [exp] 425 / 8e-148 AT5G05320 407 / 2e-140 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10025068 [exp] 415 / 8e-144 AT5G05320 410 / 1e-141 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10019728 [exp] 332 / 3e-112 AT5G05320 208 / 4e-64 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034468 [exp] 331 / 3e-111 AT5G05320 232 / 7e-73 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10019719 [exp] 311 / 1e-104 AT5G05320 176 / 3e-52 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034817 [exp] 291 / 2e-95 AT4G38540 290 / 8e-95 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G176950 [exp] 476 / 5e-168 AT4G38540 413 / 4e-143 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.004G176750 [exp] 469 / 4e-165 AT4G38540 419 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.001G307500 [exp] 302 / 1e-99 AT4G38540 295 / 1e-96 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003600 [exp] 286 / 4e-93 AT4G38540 277 / 3e-89 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003400 [exp] 286 / 4e-93 AT4G38540 283 / 4e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003500 [exp] 284 / 2e-92 AT5G05320 273 / 4e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003300 [exp] 279 / 1e-90 AT5G05320 272 / 1e-87 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003700 [exp] 279 / 2e-90 AT4G38540 256 / 9e-82 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003800 [exp] 273 / 3e-88 AT5G05320 273 / 3e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003200 [exp] 271 / 5e-88 AT4G38540 268 / 2e-86 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01494 [flax] [poplar] FAD_binding_3 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10019729 pacid=23139274 polypeptide=Lus10019729 locus=Lus10019729.g ID=Lus10019729.BGIv1.0 annot-version=v1.0 ATGGCGGCAGACTTGCAGAAAGAAGAAGATGTAGTGATTGTTGGAGCTGGCATAGCTGGCCTCGCCACGTCCTTAGCTCTCCACAGGCTTGGAGTCAGAA CAGTGGTGTTGGAATCATCATCCACTTTGAGGATTACTGGGTTTTCTCTGGGTGTATGGGGCAACGCTTGGAAAGCTCTTGACGCTCTTGGTATAGGCGA TTCAGTTCGCCAGCAACACCAGTTGCTTGATGGAATGGTTTCTGCTTCCACTATTACAAAACAGACCACTGCCCAACTGTCTTTTATCGATGGAGGACAT GAATTCCGATGCGTGCAGAGGAAACTGTTGCTTGAAGCGATGGTAAATGAGCTGCCAAATGGTACTGTGAGGTACTCTTCCAAAGTGGTTTCGATGGAGG AATCAGGAAGCTTCAAGCTGCTGCATCTTGTTGATGGTACTGTCATCAAAACCAAGGTTTTGATTGGCTGTGACGGAGTGAATTCCACGGTCGCAAAGTG GATAGGAATGAACGAACCAGTTGTTTCGGAGAGATTCGCAGCTAGGGGCTCTGCTATATTCCCACAAGGCCATGGCTTTGCCTCCAAGCTCTTCATGTTT GCTGGAAAGGGCTTTCGAGCTGGTTGCATCCCTTGTAATGAGAAAATCATGTACTGGTTTTTCTCTTGGACACCCTCCATCCAAGAAAGGGATCTCCAAG ATGACCCTTCCAGGATGAAAGAATTTCTGCAGAGCAAACTTCAGAACTCACCTGAAATGGAGAAAGTTGTGGAGAACACCAAGTTAGATAGCATCATGAC GTCTCCTTTACGCTACAGACATCCATCGGAGTTTTTGTGGAAGAAGTTAACTAGGGACAATGTCTGTGTTGCAGGGGATGCCTTGCATCCCATGACACCG GATCTCGGTCAAGGTGGCTGTGCTGCCATGGAAGATAGTGTTACACTCGGCAGGTGCCTTGCTGAAGCCATACATGGCAGCCATACAGGTATGGAGTACA AACGAATTCAGCTTGGACTGAATAAGTACGTTGAAGAGAGGAGATGGAGAAGTTTTAAGCTCGTGACCGCAGCTTGTTTGGTGGGAATCGTGCAACAAGG CGAGGGGAAGATCGTCACTTTTGTGAGGGATCGTATCTTGGCTAACTTTCTTGCTGGTTTGGCGTTGAAGATTGCTGAGTTTGACTGCGGGAAGCTCACT TATTAG
AA sequence Show only first row Show all	>Lus10019729 pacid=23139274 polypeptide=Lus10019729 locus=Lus10019729.g ID=Lus10019729.BGIv1.0 annot-version=v1.0 MAADLQKEEDVVIVGAGIAGLATSLALHRLGVRTVVLESSSTLRITGFSLGVWGNAWKALDALGIGDSVRQQHQLLDGMVSASTITKQTTAQLSFIDGGH EFRCVQRKLLLEAMVNELPNGTVRYSSKVVSMEESGSFKLLHLVDGTVIKTKVLIGCDGVNSTVAKWIGMNEPVVSERFAARGSAIFPQGHGFASKLFMF AGKGFRAGCIPCNEKIMYWFFSWTPSIQERDLQDDPSRMKEFLQSKLQNSPEMEKVVENTKLDSIMTSPLRYRHPSEFLWKKLTRDNVCVAGDALHPMTP DLGQGGCAAMEDSVTLGRCLAEAIHGSHTGMEYKRIQLGLNKYVEERRWRSFKLVTAACLVGIVQQGEGKIVTFVRDRILANFLAGLALKIAEFDCGKLT Y

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10019729 [exp]	0	1
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013334 [exp]	11.0	0.8162
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016469 [exp]	14.8	0.8722
AT5G01650			Tautomerase/MIF superfamily pr...		Lus10012223 [exp]	15.1	0.8703
AT3G13600			calmodulin-binding family prot...		Lus10039178 [exp]	27.4	0.8556
AT5G12890			UDP-Glycosyltransferase superf...		Lus10025515 [exp]	36.1	0.7898
AT5G10530			Concanavalin A-like lectin pro...		Lus10004277 [exp]	37.8	0.8400
AT3G30390			Transmembrane amino acid trans...		Lus10034353 [exp]	40.1	0.7754
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10042487 [exp]	42.1	0.8383
AT5G24090		ATCHIA	chitinase A (.1)		Lus10039317 [exp]	42.6	0.8261
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Lus10031347 [exp]	49.0	0.7705

Compare expression of checked genes

Lus10019729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.