Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13600 436 / 2e-143 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 407 / 5e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 398 / 2e-128 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 399 / 8e-128 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G25360 377 / 2e-119 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 370 / 2e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G18840 354 / 5e-112 Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G21090 349 / 4e-111 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G18750 355 / 3e-110 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20230 351 / 4e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016390 [exp] 960 / 0 AT2G13600 226 / 6e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 414 / 2e-133 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10009269 [exp] 401 / 2e-130 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000213 [exp] 396 / 3e-128 AT2G13600 435 / 8e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 379 / 1e-120 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013540 [exp] 375 / 5e-119 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030908 [exp] 383 / 1e-117 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10028593 [exp] 365 / 5e-116 AT5G16860 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028106 [exp] 366 / 1e-115 AT1G25360 916 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G085500 [exp] 422 / 1e-136 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G104700 [exp] 407 / 8e-132 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G018800 [exp] 399 / 3e-127 AT2G13600 463 / 3e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 393 / 6e-126 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G027800 [exp] 382 / 2e-121 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 379 / 1e-120 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G245300 [exp] 378 / 2e-119 AT3G22690 570 / 0.0 unknown protein Potri.004G059400 [exp] 376 / 3e-118 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 374 / 6e-118 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G088600 [exp] 369 / 8e-118 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10019731 pacid=23139240 polypeptide=Lus10019731 locus=Lus10019731.g ID=Lus10019731.BGIv1.0 annot-version=v1.0 ATGAGAAGTGTCCTAAAACCTCTGCTTGCTACGAATCCAGCTGCAAATTTTCAAGGCTACCTGAGATCATGCTTGTCCGTATTCAAAACCATCACCAGGG AAGGGGCCATCGCCCAAGGAACCGTCCTCCATGGCCATTTGATCAAAACCGGTGCTTCCTCGGAGAGGTACATATCTGTGAAGCTTTTGATAATGTACCT CACTTGTCGAAAAACAGCTGAGGCTCAGCAGGTTACAAAGGATTTTGATGGGTTTGATCCTGTTGTGCATAACTGTTTGATCAATGCCAATGTACAATGG GGGAATCTGGATGAGGCACTTAGGTTGTTCGACGAAATGCCTGAGAGAAATGAGGTGTCATGGACCACGGTGATTTCGGGTTTGATGAAGTTCGGTCGAG TTAAAGATTCGTTGTGGTATTTTCGGAGGAACCCGTTCCAGGGTGTGGTTTCCTGGACGGCTGTGATTAGTGGGTTTGTGCAGAACGGGTTGATGTCTGA AGCTTTGAGTATGTTCTTGGAGCTTTCTGCATCTCAGATTAGGCCTAACGAGGTTACCATCACATCAGTTCTCAAAGCCTGTTGCGAAGCCGGTGATTTC AGGTTCGGGATGAGTGTTTTGGGACTGACTGTTAAGATTGGACTTGAACAGACACTATCAGTTTCTAATTCTTTGATTACACTATTCTTGAGGATGGGTG ACATGTATATGAGCAGGAGTGTGTTTGATAGCATGGTGAGTAGAGATGTTGTCTCTTGGACAGCAATATTAGATATGTACGTCAAGATTGGGGATTTATC CGAGGCAAGGAGAATCTTTGACGAGATGCCTGAGAGGAACGAAGTCTCTTGGAGCGCAATGATTGCCAGGTATAGCCAGAGTGGTCATCCGGAGGATGCA TTGAAACTCTTCCATCAAATGATATCGCACAGTTTCAAACCTAATGTTTCATGTCTCTCTACTATTATAAGTGCATTGAGCGGCATCAAGGCTCTACAAG CAGGTATGAACATCCATGGACATATTGTGAAAATTGGGATGGATAGAGATGTTTATATCTCTAGCTCCCTGATTGACCTTTACTGTAAATGTGGCCAGCC AAACAATGGACGGTTGTTATTCGATTCTACTCCAGAGAAGAATGTTGTCACCTGGAATTCCATGGTTGCTGGATATGGTCTGAATGAGCAAATACAGGAA GCTAACTTGCTCTTTGACATCATGCCATCTTGTAACAGCGTTTCATGGAGTGCTCTGATCGCTGGTTACTTAGACTGCAAACAGTTTGATAAAGTGTTTG AGTTATTTGACCAGATGCTTTTATTGGGAGAGCATCCAAATAAATCTACATTCTCTTCTTTGCTATGTGCTTGTGCGAGTACAACCTCTCTAGGAAAAGG GAAGGATCTCCATGGGAAGACGATCAAACTCGGGATTCAATCAGATTTATTTGTTGGCACTGCACTCACTGACATGTATGCAAAATCCGGCGACATTGAG AGTGCTTGCAGAATCTTCAACAGGATGACAGAGAGAAACGAGTTCTCTTGGACTGTGATGATTCAGGGGCTTGCAGAAAGTGGTTTCGCGGAGGAATCCC TTAATCTGTTTGAAGAAATGGGACGAAGAAGCTCATCCACATCCCCTCCAGCTAATGAACTCATGATCTGTTCGGTTCTGTTTGCCTGTTCTCACTCTGG TTTAATTGACAAAGGCTTGGAATATTTCAGATCCATGGAGAGAATCTATGGAGTGAAGCCAAATGGATCTCACTACACATGTGTTATCGACATGCTATCG AGAGCAGGGAGACTGGACGAAGCCGAAGAGCTTGTCAACTCTATGCCCGTTCAACCTGAACCAAATGCTTTGGCAGCTTTATTGAGTGGCTGTCAAAAAC ACAAGAACGAGGAGCTTGCTGAGAGAATAGCAGCCAAGTTGTGGCAGATGGCAGAGACGGAATCTGGAGGGTATGTGATGTTATCGAACATCTACGCTTC CGCAGGGAGATGGAAAGACGTTCTGCGAGTTAGGAAGCTAATGAACGAGAAGGGTTTGAAGAAGAACGGCGGTTGCAGTTGGATCGAACTGCAAAGTCGA GTCCATTCGTTCTTCTCTGGAGATGGAGCTCATTCTGAATCAGCTGAGCTTCGTGCTGTTCTAGACCTAGTAATGCATGAAATGCTTCTTGTTTAG
AA sequence Show only first row Show all	>Lus10019731 pacid=23139240 polypeptide=Lus10019731 locus=Lus10019731.g ID=Lus10019731.BGIv1.0 annot-version=v1.0 MRSVLKPLLATNPAANFQGYLRSCLSVFKTITREGAIAQGTVLHGHLIKTGASSERYISVKLLIMYLTCRKTAEAQQVTKDFDGFDPVVHNCLINANVQW GNLDEALRLFDEMPERNEVSWTTVISGLMKFGRVKDSLWYFRRNPFQGVVSWTAVISGFVQNGLMSEALSMFLELSASQIRPNEVTITSVLKACCEAGDF RFGMSVLGLTVKIGLEQTLSVSNSLITLFLRMGDMYMSRSVFDSMVSRDVVSWTAILDMYVKIGDLSEARRIFDEMPERNEVSWSAMIARYSQSGHPEDA LKLFHQMISHSFKPNVSCLSTIISALSGIKALQAGMNIHGHIVKIGMDRDVYISSSLIDLYCKCGQPNNGRLLFDSTPEKNVVTWNSMVAGYGLNEQIQE ANLLFDIMPSCNSVSWSALIAGYLDCKQFDKVFELFDQMLLLGEHPNKSTFSSLLCACASTTSLGKGKDLHGKTIKLGIQSDLFVGTALTDMYAKSGDIE SACRIFNRMTERNEFSWTVMIQGLAESGFAEESLNLFEEMGRRSSSTSPPANELMICSVLFACSHSGLIDKGLEYFRSMERIYGVKPNGSHYTCVIDMLS RAGRLDEAEELVNSMPVQPEPNALAALLSGCQKHKNEELAERIAAKLWQMAETESGGYVMLSNIYASAGRWKDVLRVRKLMNEKGLKKNGGCSWIELQSR VHSFFSGDGAHSESAELRAVLDLVMHEMLLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10019731 [exp]	0	1
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10023863 [exp]	1.4	0.8974
AT3G03580			Tetratricopeptide repeat (TPR)...		Lus10007806 [exp]	3.5	0.8073
AT4G08210			Pentatricopeptide repeat (PPR-...		Lus10028082 [exp]	6.3	0.7871
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10022629 [exp]	6.3	0.8250
AT1G18485			Pentatricopeptide repeat (PPR)...		Lus10036071 [exp]	8.2	0.8054
AT3G18970		MEF20	mitochondrial editing factor ...		Lus10015912 [exp]	11.0	0.7632
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Lus10028971 [exp]	15.5	0.7698
AT5G47460			Pentatricopeptide repeat (PPR)...		Lus10028953 [exp]	18.0	0.7651
AT3G16610			pentatricopeptide (PPR) repeat...		Lus10035788 [exp]	20.7	0.8013
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10035164 [exp]	21.6	0.7970

Compare expression of checked genes

Lus10019731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.