Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19440 349 / 3e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 338 / 4e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 330 / 2e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 324 / 9e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09510 322 / 7e-110 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09500 314 / 1e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G66800 309 / 7e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 256 / 5e-84 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT5G58490 238 / 6e-77 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G02400 228 / 3e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016389 [exp] 481 / 5e-173 AT1G09480 320 / 1e-109 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019734 [exp] 441 / 5e-157 AT1G09480 286 / 4e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016388 [exp] 446 / 4e-155 AT5G19440 309 / 2e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008668 [exp] 347 / 1e-119 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 342 / 2e-117 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 337 / 9e-116 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 334 / 3e-114 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 331 / 3e-113 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 329 / 1e-112 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G057800 [exp] 383 / 2e-133 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057500 [exp] 358 / 4e-124 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G052000 [exp] 351 / 3e-121 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 348 / 6e-120 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 345 / 5e-119 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G138600 [exp] 246 / 4e-80 AT4G35420 535 / 0.0 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Potri.008G120200 [exp] 239 / 2e-77 AT1G68540 505 / 0.0 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G257700 [exp] 238 / 6e-76 AT2G33590 400 / 4e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G004100 [exp] 235 / 8e-76 AT2G33590 438 / 1e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G045000 [exp] 231 / 6e-74 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10019732 pacid=23139214 polypeptide=Lus10019732 locus=Lus10019732.g ID=Lus10019732.BGIv1.0 annot-version=v1.0 ATGGCTGGAGGAAGAGAAGGCAAAAGAGTTTGTGTTACAGGAGCATCAGGGTTCATTGCTTCATGGCTGGTTAAGGTCCTCCTCCAACGTGGCTACACCG TCAACGCCACAGTTCGCGACCTTGGGGACGCGACGAAAACTGACCATTTGGTTGCACTTGATGGAGCCAGGGAAAGACTCCACATCTTTGAAGCCAACCT GCTCAAGGATGGATCTTTCGACAGCGCAGTTGATGGATGCGAAGGTGTTTTCCATACCGCCTCTCCGGTTAATTTATTATCCATACCCTCCGACCCACAG GCAAAACTAGTTGAGCCTGCAGTGAAGGGAACTCTAAATGTCCTGCAATCATGCACAAAATACCAATCCGTGAAGAGAGTTGTCTTAACATCTTCCGTTG CTACAGCTGCCTACACCGAGAAGACCTTGAAATCCGGATCGGTGATCGACGAGACATTGTATTCGGACCCAAGTCTTTGGTACGCATATTCGAAAACCTT GGCTGAGAAGGCAGCCTGGAGCTTTGCAGAAGAGCATGGCATTGATTTGGTAACGATAAATCCGGTTTTCGTTATTGGTCCTATGTTACAACCAACTCTC AATGAAACAGTGGAAATGATTCTCAACTTCATCAAAGAACCTCACAAGTCGAATAATGGCAGCAAACCGTATCCTTGTGTTGATGTCAGAGACGTCGCAG ATGCACATGTCATAGCTTTGGAGACTAGTACGGCTGCTGGAAGATACATTTTGTCTGCCAGTGTTCATAGCTACCCAAAGGTGTTCAAGATCATCAATCA ACTCTATCCTGTGCTGAACCTGCCTGACCTAAGTGATGAGGGAGTACCAGAGATTCAGATATCGCAGAAGAAAGCTAAATCTTTAGGTGTGAGCTTTATT TCGATCGAGGTGAGTCTGAAGGACACCATCGAAAGCTTGAAGAAAAATGGCTATCTCACCATTTGA
AA sequence Show only first row Show all	>Lus10019732 pacid=23139214 polypeptide=Lus10019732 locus=Lus10019732.g ID=Lus10019732.BGIv1.0 annot-version=v1.0 MAGGREGKRVCVTGASGFIASWLVKVLLQRGYTVNATVRDLGDATKTDHLVALDGARERLHIFEANLLKDGSFDSAVDGCEGVFHTASPVNLLSIPSDPQ AKLVEPAVKGTLNVLQSCTKYQSVKRVVLTSSVATAAYTEKTLKSGSVIDETLYSDPSLWYAYSKTLAEKAAWSFAEEHGIDLVTINPVFVIGPMLQPTL NETVEMILNFIKEPHKSNNGSKPYPCVDVRDVADAHVIALETSTAAGRYILSASVHSYPKVFKIINQLYPVLNLPDLSDEGVPEIQISQKKAKSLGVSFI SIEVSLKDTIESLKKNGYLTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10019732 [exp]	0	1
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10022904 [exp]	15.9	0.8267
AT5G23520			smr (Small MutS Related) domai...		Lus10004296 [exp]	21.5	0.8085
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013173 [exp]	37.6	0.7931
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Lus10004118 [exp]	39.1	0.8011
AT5G25800			Polynucleotidyl transferase, r...		Lus10018935 [exp]	41.8	0.7835
AT2G23770			protein kinase family protein ...		Lus10021889 [exp]	54.4	0.7960
AT4G27790			Calcium-binding EF hand family...		Lus10022381 [exp]	58.3	0.7840
AT1G23540		IGI1, AtPERK12	proline-rich extensin-like rec...		Lus10030610 [exp]	59.4	0.7494
AT4G17070			peptidyl-prolyl cis-trans isom...		Lus10036745 [exp]	61.3	0.7839
AT5G11350			DNAse I-like superfamily prote...		Lus10008086 [exp]	67.0	0.7729

Compare expression of checked genes

Lus10019732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.