Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016388 [exp] 146 / 9e-41 AT5G19440 309 / 2e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021285 [exp] 46 / 6e-07 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019733 pacid=23139328 polypeptide=Lus10019733 locus=Lus10019733.g ID=Lus10019733.BGIv1.0 annot-version=v1.0 ATGGCAGCAAGCCAGCAACCCCCTGTTCCCCAATTTCCGACTGCGTTAACTGGTTTAGGGTTTAGAGTTTATCTTGACTTGGGTCCCCGAGTAGTCAAAG TCGTTTCAGCCTTCGTGTACCCGAACAACAACCAAATCGGTTGGGCGAACTGGACAATCACACTCGACTTTGTTGGGGCTGAAGCGACAACATTCATCTA TCTCGACCTAGTAGACGCCTCTGTGTTCCGGAGGAGCGACAACTCGGTTATGGCAACGGCGACTGATGGTCAGTTCGGGCACAGGGGGAATCTTCTGATG ATTAATTTGAGAACAACGGAGGCAGCGATGGCAGTGCTGGGACGGGATCTGGTTGGGTGGTGGAATTTTGGAGTTTCGGTTCTTGCATGGATGGGAGGGT CCGAATCAGTTGCTAACCGACGTTATCACCTTTTAAGAAAAGTAGAAAACCTATTTCGCGCGAATCAGTTGCGATCCGACATGGATGAGAGGGTCCGAAT CCACCAATCATGTGAAACAAAATCCATGCGAATTCGAGATGCTTCGAGAAGGGAAGGTAGACGAGAGTTGGACGAGACTCAACCTTACGACGCATATCTG ATTTGCGGGGAAGCGATGCGACTGACTATCGAAGTTTATTACAGACCTGGTTACTGA
AA sequence Show only first row Show all	>Lus10019733 pacid=23139328 polypeptide=Lus10019733 locus=Lus10019733.g ID=Lus10019733.BGIv1.0 annot-version=v1.0 MAASQQPPVPQFPTALTGLGFRVYLDLGPRVVKVVSAFVYPNNNQIGWANWTITLDFVGAEATTFIYLDLVDASVFRRSDNSVMATATDGQFGHRGNLLM INLRTTEAAMAVLGRDLVGWWNFGVSVLAWMGGSESVANRRYHLLRKVENLFRANQLRSDMDERVRIHQSCETKSMRIRDASRREGRRELDETQPYDAYL ICGEAMRLTIEVYYRPGY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019733 [exp]	0	1
AT2G35795			Chaperone DnaJ-domain superfam...		Lus10041420 [exp]	8.6	0.7857
AT2G24990			Serine/threonine-protein kinas...		Lus10032627 [exp]	12.1	0.7717
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Lus10036939 [exp]	17.3	0.7247
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022652 [exp]	17.9	0.7688
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042936 [exp]	22.4	0.7353
AT4G14600			Target SNARE coiled-coil domai...		Lus10036461 [exp]	30.2	0.6654
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10003329 [exp]	33.2	0.7172
AT3G15580		APG8H, ATG8I	AUTOPHAGY 8I, AUTOPHAGY 8H, Ub...		Lus10038046 [exp]	34.0	0.7103
AT1G12400			Nucleotide excision repair, TF...		Lus10000383 [exp]	35.3	0.7010
AT5G62950			RNA polymerase II, Rpb4, core ...		Lus10005329 [exp]	39.0	0.6650

Compare expression of checked genes

Lus10019733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.