Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19440 286 / 8e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 283 / 3e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 278 / 9e-93 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G51410 277 / 2e-92 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 273 / 5e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09500 266 / 9e-89 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G66800 262 / 1e-86 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 217 / 7e-69 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT5G58490 201 / 7e-63 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G02400 187 / 1e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019732 [exp] 439 / 3e-156 AT5G19440 349 / 3e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016389 [exp] 427 / 2e-152 AT1G09480 320 / 1e-109 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016388 [exp] 426 / 2e-147 AT5G19440 309 / 2e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 283 / 1e-94 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008668 [exp] 282 / 2e-94 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 281 / 9e-94 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024130 [exp] 295 / 5e-93 AT5G09860 933 / 0.0 nuclear matrix protein-related (.1.2) Lus10002300 [exp] 272 / 2e-90 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 265 / 1e-87 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G057800 [exp] 309 / 6e-105 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057500 [exp] 300 / 3e-101 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 287 / 2e-96 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G052000 [exp] 284 / 3e-95 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 276 / 3e-92 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G138600 [exp] 208 / 2e-65 AT4G35420 535 / 0.0 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Potri.008G120200 [exp] 201 / 9e-63 AT1G68540 505 / 0.0 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.010G125400 [exp] 186 / 9e-57 AT1G68540 428 / 1e-151 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G257700 [exp] 184 / 2e-55 AT2G33590 400 / 4e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G181400 [exp] 182 / 3e-55 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10019734 pacid=23139320 polypeptide=Lus10019734 locus=Lus10019734.g ID=Lus10019734.BGIv1.0 annot-version=v1.0 ATGGTTGCCGGAGAAGGGAAGAAAGTTTGTGTTACAGGAGCATCGGGCTTCATCGCTTCATGGCTCGTAAAGGTGTTGCTCCAACGTGGCTACACCATCA ACGCCACAGTTCGCGACCTTGGGGACGCGACGAAAACTGACCATTTGGTTGCGCTAGATGGAGCCAGGGAAAGACTTCACATCTTTGAAGCAAACCTGCT CAAGGATGGATCTTTCGACCGGGCAGTCGATGGGTGTGAAGCTGTTGTCCATACCGCGTCTCCGGTTAATCTATCCATACCCTCCGACCCACAGGCTGAG CTAGTTGAGCCTGCAGTGAAGGGAACCCTCAATGTCCTGAAATCATGCAAGAAATACCAATCCGTGAAGAGAGTGGTCTTAACATCTTCAGTTGCTACAA TTGGCTACACCGGGAAGCCCTTTGAATCCGGATCAGTGATCGATGAGACTTGCTTTGGTATCGCATACTCGAAAACCTTGGCCGAGAAGGCTGCCAGGAG CTTTGCAGAAGAGCATGGTATTGATTTGGTGATGGTAAATCCAGTTTTCGTTATTGGTCCTATGTTACAGCCAACTCTCAATGAAACAGTGGAAATGATT CTCAACTTCATCAAAGGTTACATTTTTTTCTGGAATAATTCCCAGTACACACTCAAAGGACGGATAGTTGGATACTTAACTTGTCATTTTTGCGCGGTGT TTCGCGCAGAACCTCACAAGTCGGATACCAGCCAACCGTACCCTTATGTTGATGTCAGAGACGTCGCAGATGCACACATCAGAGCTTTGGAGACTCCTGC CCCTGCTGGAAGGTACATTTTGTCTGCCAGTGTTCATAGCTACCACCAGGTGTTCAAGATCATCAATCAACTTTATCCTTTATTGAACCTTCCTCATATG TGA
AA sequence Show only first row Show all	>Lus10019734 pacid=23139320 polypeptide=Lus10019734 locus=Lus10019734.g ID=Lus10019734.BGIv1.0 annot-version=v1.0 MVAGEGKKVCVTGASGFIASWLVKVLLQRGYTINATVRDLGDATKTDHLVALDGARERLHIFEANLLKDGSFDRAVDGCEAVVHTASPVNLSIPSDPQAE LVEPAVKGTLNVLKSCKKYQSVKRVVLTSSVATIGYTGKPFESGSVIDETCFGIAYSKTLAEKAARSFAEEHGIDLVMVNPVFVIGPMLQPTLNETVEMI LNFIKGYIFFWNNSQYTLKGRIVGYLTCHFCAVFRAEPHKSDTSQPYPYVDVRDVADAHIRALETPAPAGRYILSASVHSYHQVFKIINQLYPLLNLPHM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09480			NAD(P)-binding Rossmann-fold s...		Lus10019734 [exp]	0	1
					Lus10012672 [exp]	7.3	0.7819
					Lus10004451 [exp]	8.1	0.7681
AT4G33820			Glycosyl hydrolase superfamily...		Lus10014647 [exp]	11.0	0.7676
AT3G10113	MYB		Homeodomain-like superfamily p...		Lus10031893 [exp]	43.4	0.7512
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10021696 [exp]	52.2	0.7507
AT1G18530			EF hand calcium-binding protei...		Lus10039961 [exp]	92.2	0.7214
AT3G12690		AGC1.5	AGC kinase 1.5 (.1.2.3)		Lus10001757 [exp]	92.2	0.7057
AT3G52360			unknown protein		Lus10029348 [exp]	138.1	0.7008
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10032324 [exp]	168.9	0.6765
AT1G29010			unknown protein		Lus10015398 [exp]	171.7	0.6826

Compare expression of checked genes

Lus10019734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.