Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33990 1015 / 0 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 598 / 0 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 552 / 0 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 548 / 0 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G30700 542 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 527 / 9e-178 MEF22 mitochondrial editing factor 22 (.1) AT5G16860 520 / 5e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22690 516 / 2e-171 unknown protein AT3G02010 514 / 6e-171 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26782 508 / 8e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016387 [exp] 1001 / 0 AT4G33990 717 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 611 / 0 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035788 [exp] 570 / 0 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10038400 [exp] 567 / 0 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 564 / 0 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 558 / 0 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007806 [exp] 554 / 0 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 546 / 0 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035815 [exp] 536 / 1e-179 AT4G30700 1026 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G466066 [exp] 1147 / 0 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 600 / 0 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 593 / 0 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 575 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G006800 [exp] 559 / 0 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G155100 [exp] 550 / 0 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G181800 [exp] 548 / 0 AT4G30700 1025 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075800 [exp] 546 / 0 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 538 / 2e-178 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 533 / 2e-178 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10019735 pacid=23139275 polypeptide=Lus10019735 locus=Lus10019735.g ID=Lus10019735.BGIv1.0 annot-version=v1.0 ATGCTAGCTTCAAAAGGAAGGGACATTTTACTCTCAATTAAACCTCATAGCCGTCTTTTCTCTATAGCTACAAGCTCTGTGCTAGCTAGAAATGATAATG GGAATCCAGGGATTCTTAACCTTGATCATCTGTTCAAATCATGCACCAAGCTGGAACATGCTAAGTGCATTCAATCACTTTTGGTGGTATCAGGAAGAGT TCAAAGCAGTTTTTTCTACGGAAAGCTCATTAATTTATACGCAGAATTCGGTGGCGTTCAGTTTCTGAACATTGTTTTCGATAAGGGCCCTAGAACGGAT GTCTTTCTGTGGAACACTATGGTTTCTGCTTATGTTCGATCTCGTCGTTTTCAAGAAGCGGTGGACTGCTTCAATCAGCTTTTACTGACATCTGGTCTGC GACCAGATTTCTATACTTTCCCCCCTGTGCTTAAAGCCTGCAGAAACCTATTTGATGGGCAGAAGGTGCATTGCTGCATTCTGAAGCTTGGTTTTGAATG GGATGTTTTCATAGCTGCTTCCTTATTGCACATGTATTCGAGGTTCGAGATAGTGGAAGGTGCTCGGAAATTGTTTGACAATATGCCATTCAGAGATGGT GGTTCTTGGAACGCCATGATTTCAGGATATTGCTTGAATGGGAATGCAGCCGATGCGTTGGATCTTGTAAATGATATGAGACTGGAAGGGGTGAAAATGG ATGCTATAACTGTTGCCAGTACTCTTCCTGCATGTGTACAATTAAATGATTTTATAGGCGGAAAGTTGATCCATTTGTACGCCGTAAAGCACGGGTTGGA ACTCAGTTTGTTCGTGTCGAATGCACTAATTGACATGTACAGTAAATTTCGTGGGTTAGGTGAAGCACGCAGAGTTTTTGAGCAGATGGAGGTAAAAGAT GTTATCTCGTGGAATTCAATAATTGCTGCATACGAGCAAAATAACGATCCCGTCGATGCTCGTTTGTTGTTTGGAAATATGCAACGAGTTGGAATCCAAC CTGATGTGTTTACACTCGTTAGTTTGGCTTCGGTTGTTTCTCAGTTGAATGATCACAAGAATGCCAGGTCTCTTCATGGATTTATACTCAGGAGAGGATT TTTCAAGGAAGCTGTAATTACTGGAAATGCGGTGGTGGACATGTACGCTAAAATGGGAATCACGGAATATGCGAGGTGTGTCTTTGAACGGCTTCCTGCT AAAGATGTGGTAACATGGAACAGTTTAATTACTGGCTATGCTCAGAATGGTTTTGCAAACGAAGCTAGCGCATTATTCTCTATGATGAAAGGTTCCAAAG ATATAGTCCCAAGCCAAGGTACATGGGTGAGCGTATTACCGGCATACTCCCAGCTCGGTGCTTTGCAGCAAGGAATGGGAATTCACGCACGTGTTATAAA AGACTCCCTCTGCTCAGATATTTATGTCGGAACTTGTCTAGTTGACTTGTATGGAAAGTGTGGTCGACTCGATGATGCCATGTCATTGTTTTATGAAGTG CCTAGGCAAAGTTCTGTTCCTTGGAATGCCATAATAGCTTGTCATGGAGTTCACGGGCATAGTGAGAAAGCACTTAAATTGTTGAAAGAAATGATTGCTG AAAGGGTGAAGCCAGATCAGGTAACGTTTGTATCTTTACTATCAGCATGTAGTCATGCGGGTATGGTTAAAGAAGGAGAATGGTGCTTCCATATGATGCA AGAAGAGTATGGAATTAGACCTATTTTGAAACATTATGGCTGCATGGTTGATTTGTATGGTAGAGCTGGTCTCTTGGATGTGGCTTTCAAGTTCATTAAA AACATGCCGATACAGCCTGATGCATCCATCTGGGGTGCTCTGATTGGTGCCTGCAGAATTCACGGAAATGTCGAGTTGGGAAAAGCTGCATCTGCTCATT TATTCGAAGTTGACCCTGAGAACGTTGGATATTATGTTTTACTATCGAATATATATGCAAAAGCAGGGAAATGGGAAGGAGTTAATGATGTGAGATCGTT GGCTCGAGGAATGGGATTGAAGAAGACTCCCGGGTGGAGCTCGATTGAAGTGGATAAGAAGGTTGATGTGTTTTACACAGGGAACCAGAGTCATCCACTG CACAACCATATATTTAAGGAGCTGAAGGAATTGCTATGCAAAATGAAAGCCAGGGGATATGTTCCGGACTTCAGCTTTGTGTTGCAGGATGTTGAGGATG ATGAGAAGGAGCACATCCTCATGAGTCACAGTGAGAGATTGGCGATTGCGTATGGAATAATAAGCACCGCTCCAAAAAGCTCTCTTCATATCTTCAAGAA TTTGCGAGTGTGTGGAGATTGCCATAGTGCGATTAAATATATTTCTGGAATTACGGGCAGGGAAATTGTCGTTAGGGATTCCAACCGTTTTCATCACTTT CGAAATGGAAGTTGTTCTTGTGGTGATTACTGGTGA
AA sequence Show only first row Show all	>Lus10019735 pacid=23139275 polypeptide=Lus10019735 locus=Lus10019735.g ID=Lus10019735.BGIv1.0 annot-version=v1.0 MLASKGRDILLSIKPHSRLFSIATSSVLARNDNGNPGILNLDHLFKSCTKLEHAKCIQSLLVVSGRVQSSFFYGKLINLYAEFGGVQFLNIVFDKGPRTD VFLWNTMVSAYVRSRRFQEAVDCFNQLLLTSGLRPDFYTFPPVLKACRNLFDGQKVHCCILKLGFEWDVFIAASLLHMYSRFEIVEGARKLFDNMPFRDG GSWNAMISGYCLNGNAADALDLVNDMRLEGVKMDAITVASTLPACVQLNDFIGGKLIHLYAVKHGLELSLFVSNALIDMYSKFRGLGEARRVFEQMEVKD VISWNSIIAAYEQNNDPVDARLLFGNMQRVGIQPDVFTLVSLASVVSQLNDHKNARSLHGFILRRGFFKEAVITGNAVVDMYAKMGITEYARCVFERLPA KDVVTWNSLITGYAQNGFANEASALFSMMKGSKDIVPSQGTWVSVLPAYSQLGALQQGMGIHARVIKDSLCSDIYVGTCLVDLYGKCGRLDDAMSLFYEV PRQSSVPWNAIIACHGVHGHSEKALKLLKEMIAERVKPDQVTFVSLLSACSHAGMVKEGEWCFHMMQEEYGIRPILKHYGCMVDLYGRAGLLDVAFKFIK NMPIQPDASIWGALIGACRIHGNVELGKAASAHLFEVDPENVGYYVLLSNIYAKAGKWEGVNDVRSLARGMGLKKTPGWSSIEVDKKVDVFYTGNQSHPL HNHIFKELKELLCKMKARGYVPDFSFVLQDVEDDEKEHILMSHSERLAIAYGIISTAPKSSLHIFKNLRVCGDCHSAIKYISGITGREIVVRDSNRFHHF RNGSCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Lus10019735 [exp]	0	1
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10004055 [exp]	3.0	0.8437
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10019891 [exp]	4.9	0.7891
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10018858 [exp]	10.7	0.8340
AT1G13040			Pentatricopeptide repeat (PPR-...		Lus10036129 [exp]	11.4	0.8002
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10017504 [exp]	12.0	0.7660
AT4G31770		ATDBR1	ARABIDOPSIS THALIANA DEBRANCHI...		Lus10020096 [exp]	17.3	0.7752
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10007449 [exp]	17.7	0.8182
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10036700 [exp]	20.4	0.7905
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10015030 [exp]	22.4	0.7778
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10022401 [exp]	22.4	0.8072

Compare expression of checked genes

Lus10019735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.