Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031020 [exp] 134 / 8e-38 AT3G10430 88 / 3e-19 F-box and associated interaction domains-containing protein (.1) Lus10019739 [exp] 108 / 2e-29 AT3G06240 53 / 5e-08 F-box family protein (.1) Lus10029527 [exp] 97 / 5e-24 AT3G07870 70 / 6e-13 F-box and associated interaction domains-containing protein (.1) Lus10039614 [exp] 63 / 1e-11 AT5G09230 457 / 7e-161 sirtuin 2 (.1.2.3.4.5.6.7)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G012200 [exp] 45 / 1e-05 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G262900 [exp] 41 / 0.0002 AT4G12560 107 / 5e-26 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF07734 [flax] [poplar] FBA_1 F-box associated
Representative CDS sequence Show only first row Show all	>Lus10019738 pacid=23139232 polypeptide=Lus10019738 locus=Lus10019738.g ID=Lus10019738.BGIv1.0 annot-version=v1.0 ATGGTTGATTCCCGACTGAATAGTTTCATTAGTGATCCTTGTGTGCATGTTGATGGAGTTTGCTACTGGCTGGGAAGTCGTCTAAACCCTGGTTATGCCG ATTTGATTGTCTTCTTTACATTGTGCAATGAGTTGTTCGATGAATTTCCTCTTCCAAATGACTTAAACCCGGGAGGTCGTCTTTTAACTATTGGAAGTTT ATGGAAGGGCTCACTTTGTTTGTTGTTGCACGAGTATGTAGCCAGACTAGTTGATGAAGTGACAATTTGGGTGATGAACGAAGGGGCTTGGATGAAGCTA GTGTTTATGGAATTGGAATCCTCCCACGTAATGTATAATGTTCTTGCTTTCAAGGAAAATGACGTGGTTTTATTCACAGCTGGTAGTGAAATAGACGACG ATGGTCAGGTTCAGGATGAATGCCTGATTAGACTTGATCTGAAAACAAGAGTAGAGGTGGAGTTGATGGTTGTGAGGAATGACGTTGGTGTAATTTCTCT GAATACTGGTTACATTGAGAGCCTTGTGTTGCTTGAGTGA
AA sequence Show only first row Show all	>Lus10019738 pacid=23139232 polypeptide=Lus10019738 locus=Lus10019738.g ID=Lus10019738.BGIv1.0 annot-version=v1.0 MVDSRLNSFISDPCVHVDGVCYWLGSRLNPGYADLIVFFTLCNELFDEFPLPNDLNPGGRLLTIGSLWKGSLCLLLHEYVARLVDEVTIWVMNEGAWMKL VFMELESSHVMYNVLAFKENDVVLFTAGSEIDDDGQVQDECLIRLDLKTRVEVELMVVRNDVGVISLNTGYIESLVLLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019738 [exp]	0	1
AT3G06240			F-box family protein (.1)		Lus10019739 [exp]	1.0	0.9264
AT1G74580			Pentatricopeptide repeat (PPR)...		Lus10000909 [exp]	22.9	0.8502
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10016684 [exp]	30.3	0.8363
AT4G20720			dentin sialophosphoprotein-rel...		Lus10015137 [exp]	81.9	0.8014
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Lus10024748 [exp]	89.6	0.8037
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Lus10002548 [exp]	91.0	0.8203
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Lus10004897 [exp]	91.2	0.8099
AT1G73450			Protein kinase superfamily pro...		Lus10042297 [exp]	104.3	0.8099
					Lus10026434 [exp]	106.4	0.7975
AT3G51650			unknown protein		Lus10009098 [exp]	160.9	0.7923

Compare expression of checked genes

Lus10019738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.