Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06240 54 / 4e-08 F-box family protein (.1) AT3G04660 47 / 7e-06 F-box and associated interaction domains-containing protein (.1) AT3G10790 46 / 8e-06 F-box associated ubiquitination effector family protein (.1) AT3G16210 46 / 8e-06 F-box family protein (.1) AT1G52490 44 / 7e-05 unknown protein AT1G11620 41 / 0.0005 F-box and associated interaction domains-containing protein (.1) AT3G10430 41 / 0.0005 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031020 [exp] 262 / 1e-86 AT3G10430 88 / 3e-19 F-box and associated interaction domains-containing protein (.1) Lus10029527 [exp] 135 / 4e-37 AT3G07870 70 / 6e-13 F-box and associated interaction domains-containing protein (.1) Lus10019738 [exp] 108 / 3e-29 ND / Lus10039593 [exp] 78 / 4e-17 AT4G12560 75 / 9e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10038606 [exp] 53 / 6e-08 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10037892 [exp] 53 / 8e-08 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10035414 [exp] 48 / 3e-06 AT5G10360 446 / 5e-160 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10038603 [exp] 48 / 4e-06 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10026587 [exp] 46 / 1e-05 AT3G06240 104 / 3e-24 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262900 [exp] 105 / 3e-26 AT4G12560 107 / 5e-26 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.015G013800 [exp] 66 / 4e-12 AT4G12560 105 / 7e-25 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G014300 [exp] 61 / 1e-10 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.012G099733 [exp] 58 / 1e-09 AT3G16210 92 / 2e-20 F-box family protein (.1) Potri.011G121200 [exp] 56 / 6e-09 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013000 [exp] 55 / 2e-08 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G012200 [exp] 53 / 8e-08 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318400 [exp] 51 / 2e-07 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.001G035500 [exp] 49 / 1e-06 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058900 [exp] 47 / 4e-06 AT3G06240 132 / 2e-34 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF07734 [flax] [poplar] FBA_1 F-box associated
Representative CDS sequence Show only first row Show all	>Lus10019739 pacid=23139326 polypeptide=Lus10019739 locus=Lus10019739.g ID=Lus10019739.BGIv1.0 annot-version=v1.0 ATGGCGAACTATCTTCCTCAAGAAGTGGTGGTCGACATTCTAGCTCGATTGCCGGTCAGAGAAATCGTGAAATGCAGAAAGCTCGTCGAAATTCCTCCCC CGATTTTCACTCACGAATCTCGCAACCCGTATGTTGATGCGGTAGGATTCGGGTATGATGCTGTGAACGATGATTATAAGCTGGTGAGTATCTCGGTGGA CGCTTTGAAGGGTCAGTTGGTCGAGACTTATTCATGGAGAAGTGGGGTTTGGAAAATGGTTGACCACCAGTTAAACAGCCTAATTAGAGAAGGTTCTTCT GCACTGTATATCAATGGAGTGTGTTACTGGCTCGCGAGTCGGAGGAAGCCAGGTCAGAACAACATGATTGTCTCGTTTTCTATGGGCGCAGACCAGGTGT TTAACGAAATGGCTGTACCGGATGATGTAGTCGAGAGCTACTATTTGGGTCTTAGTAATTTGTGCAGTAGTGATGGATTGCTTTCTCTGGTGCATTGCAT TAATCGTTATTCATCAAAAGTGGACGCTGTGACGATTTGGGTGATGAAAGAAGGGCTTTGGGTGAAGGCTGTTGTTTGGGAAAGCTCCCGCGTAGTGTAC AAGATCATAGCTGTCGAGGAGAATGCAGTGGCTTTGTTCATTGTTGCTGCTGGCTTGTTTGATACGGAGGAATGTCTGGTTAGATATGACACGAGGAAGG GAGAAGAAGTTGAATTGATGGTTGTGAGAGATGTAGGGATACTTGAGTTCATTGGTTAA
AA sequence Show only first row Show all	>Lus10019739 pacid=23139326 polypeptide=Lus10019739 locus=Lus10019739.g ID=Lus10019739.BGIv1.0 annot-version=v1.0 MANYLPQEVVVDILARLPVREIVKCRKLVEIPPPIFTHESRNPYVDAVGFGYDAVNDDYKLVSISVDALKGQLVETYSWRSGVWKMVDHQLNSLIREGSS ALYINGVCYWLASRRKPGQNNMIVSFSMGADQVFNEMAVPDDVVESYYLGLSNLCSSDGLLSLVHCINRYSSKVDAVTIWVMKEGLWVKAVVWESSRVVY KIIAVEENAVALFIVAAGLFDTEECLVRYDTRKGEEVELMVVRDVGILEFIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06240			F-box family protein (.1)		Lus10019739 [exp]	0	1
					Lus10019738 [exp]	1.0	0.9264
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10016684 [exp]	3.2	0.9083
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022482 [exp]	20.5	0.8973
AT4G28760			Protein of unknown function (D...		Lus10011912 [exp]	21.0	0.8925
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001859 [exp]	24.5	0.9011
AT3G12590			unknown protein		Lus10001699 [exp]	25.5	0.8957
AT3G55160			unknown protein		Lus10007253 [exp]	28.5	0.8966
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Lus10002548 [exp]	32.4	0.8911
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10043451 [exp]	33.4	0.8915
AT3G61690			nucleotidyltransferases (.1)		Lus10030266 [exp]	34.2	0.8952

Compare expression of checked genes

Lus10019739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.