Plant FIBer expression Database

Lus10019740 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G26750 154 / 1e-47 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016383
[exp]
291 / 4e-102 AT1G26750 160 / 4e-50 unknown protein
Lus10031376
[exp]
234 / 2e-79 AT1G26750 145 / 4e-44 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G165500
[exp]
182 / 6e-59 AT1G26750 171 / 2e-54 unknown protein
PFAM info
Representative CDS sequence
>Lus10019740 pacid=23139286 polypeptide=Lus10019740 locus=Lus10019740.g ID=Lus10019740.BGIv1.0 annot-version=v1.0
ATGTCGTTTATGAAGGGGGATTTGCTGTCGAGAACCAGGAGGCTTGTCAAGGGCATGGCTAAAGCTGAGCCTGTTTGGCTCAAGGCCATGGAGCAGGCAC
CTCCTGCAACGTTTCCTCTAACTAATGGGAAGATCCAGAAGATCATCCTCCCTGAAGATCCTTACATAAAGAAGTTCTTTGAGAAGCACCCACTTTTACA
GCCTGAAGATCCCGTCAGGATGTCTAGCATCAATCCACCTCCAGCACGAGTGTTTGCGTCGCGGGTGCTCGAGTTAAAGGAACAGGGAGTCCGAGAAGAA
GAAGCCATCAATATTGCTGATAGGGAGTATCGAACAGAGAGAAAAACGAGAAAGGAGGCTTATACTCGACTGAAAGAGATAGCCAATGTTCTGGGTAAGA
ACCCTCCTCCAAGGCCATACCCGAAGAACAAGAAAGAGACACGGGAAGAAGAGAGGTGGCAGGCTCGTAACCCTAGGATCTTTGAGATTGTACGGAGGCT
CAAGGATGAAATGACTGCTGACACCACCCGTGAAAGATCCCGACGCAACTGA
AA sequence
>Lus10019740 pacid=23139286 polypeptide=Lus10019740 locus=Lus10019740.g ID=Lus10019740.BGIv1.0 annot-version=v1.0
MSFMKGDLLSRTRRLVKGMAKAEPVWLKAMEQAPPATFPLTNGKIQKIILPEDPYIKKFFEKHPLLQPEDPVRMSSINPPPARVFASRVLELKEQGVREE
EAINIADREYRTERKTRKEAYTRLKEIANVLGKNPPPRPYPKNKKETREEERWQARNPRIFEIVRRLKDEMTADTTRERSRRN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G26750 unknown protein Lus10019740
[exp]
0 1
AT1G67420 Zn-dependent exopeptidases sup... Lus10015792
[exp]
2.6 0.9429
AT5G59613 unknown protein Lus10005899
[exp]
8.0 0.9230
AT3G21820 SDG36, ATXR2 SET DOMAIN PROTEIN 36, histone... Lus10015102
[exp]
9.2 0.9156
AT4G28360 Ribosomal protein L22p/L17e fa... Lus10006865
[exp]
12.6 0.9225
AT3G56210 ARM repeat superfamily protein... Lus10017416
[exp]
13.2 0.9136
AT1G04530 TPR4 tetratricopeptide repeat 4, Te... Lus10023721
[exp]
13.7 0.8767
AT5G59850 Ribosomal protein S8 family pr... Lus10029461
[exp]
14.4 0.9116
AT5G23535 KOW domain-containing protein ... Lus10042614
[exp]
14.5 0.9072
AT3G11470 4'-phosphopantetheinyl transfe... Lus10017021
[exp]
15.0 0.9012
AT5G21930 ATHMA8, HMA8, P... ARABIDOPSIS HEAVY METAL ATPASE... Lus10009789
[exp]
15.9 0.8664

Lus10019740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.