Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33260 268 / 2e-87 Protein kinase superfamily protein (.1.2) AT4G10390 267 / 2e-87 Protein kinase superfamily protein (.1) AT2G29000 170 / 1e-46 Leucine-rich repeat protein kinase family protein (.1) AT3G02810 166 / 2e-46 Protein kinase superfamily protein (.1) AT3G19300 166 / 8e-46 Protein kinase superfamily protein (.1) AT2G28960 164 / 1e-44 Leucine-rich repeat protein kinase family protein (.1) AT4G29990 164 / 1e-44 Leucine-rich repeat transmembrane protein kinase protein (.1) AT1G51880 160 / 2e-43 RHS6 root hair specific 6 (.1) AT4G20450 160 / 3e-43 Leucine-rich repeat protein kinase family protein (.1) AT5G02800 154 / 4e-43 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016382 [exp] 648 / 0 AT1G33260 280 / 2e-92 Protein kinase superfamily protein (.1.2) Lus10013656 [exp] 357 / 2e-122 AT4G10390 282 / 2e-93 Protein kinase superfamily protein (.1) Lus10032672 [exp] 160 / 5e-45 AT5G54590 650 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10043083 [exp] 160 / 5e-45 AT5G54590 652 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10038174 [exp] 161 / 3e-44 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019844 [exp] 159 / 3e-43 AT3G19300 771 / 0.0 Protein kinase superfamily protein (.1) Lus10014071 [exp] 159 / 5e-43 AT3G19300 777 / 0.0 Protein kinase superfamily protein (.1) Lus10038172 [exp] 159 / 9e-43 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025849 [exp] 159 / 1e-42 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G147100 [exp] 334 / 3e-113 AT4G10390 325 / 5e-110 Protein kinase superfamily protein (.1) Potri.001G454800 [exp] 327 / 4e-109 AT1G33260 323 / 5e-108 Protein kinase superfamily protein (.1.2) Potri.009G100400 [exp] 164 / 3e-45 AT3G19300 773 / 0.0 Protein kinase superfamily protein (.1) Potri.004G140301 [exp] 164 / 5e-45 AT1G49730 744 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.004G235700 [exp] 157 / 2e-44 AT5G54590 161 / 2e-45 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.001G415300 [exp] 155 / 3e-43 AT5G54590 633 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.010G200600 [exp] 159 / 5e-43 AT3G55550 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.019G094200 [exp] 156 / 6e-43 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.002G241600 [exp] 153 / 2e-42 AT3G07070 543 / 0.0 Protein kinase superfamily protein (.1) Potri.006G132100 [exp] 157 / 4e-42 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10019741 pacid=23139188 polypeptide=Lus10019741 locus=Lus10019741.g ID=Lus10019741.BGIv1.0 annot-version=v1.0 ATGGCGTTTGGCGACGGCTGCTGTATACCAATCCCAAATTTCCTGACTTGCAGGCGCCGCCGTCGGAAACTCACGGGGGACCAGGTGGTGGCTGTTTGTG ACGACGACGATGATTTCGTGGCTGTTTACGGCTGGCCTGAGATTGAGAGGCTCACAAAGGATTTCAATTGCTTGATTGGATCTGGTGGGTTTAGTAATGT GTATTTGGCGGCGCATCCTCCCAGCGGCGGCTACGCCGCAGTGAAGGTCTGCTGCGCCGGCGGGGACTATCTAAGCCCTCTTTTCAATCAGGAGCTCGAC ATCCTTCTCCGTCTCCGCCACCCGAATGTCGTCAGACTTATGGGGTACTCCTCCGATCAAGGGGGTGCACTGATGATGGAGTATGCAGCCAACGGAACCT TGCAAGAGAAGCTACACGGCAGCAAGTCGATTTCTTCCAACACCGTAAACCCTGCTCCGTTATCTTGGACGAGAAGAATGACCATCGCGTACCAGCTTGC ACAGGCGATCGAGTACCTCCACGACAAATGCGACTCCCAACTCCCAATCGTCCATGGAGACATCAAAGCCTCCAACGTCTTACTCGACTCCCAACTCAAC TGCAAGCTCTGCGATTTCGGATCAGCCAAGATAGGGTTCTCTTCCTCCGTAGCCGCAACGCGGCCGCGGAGGAAGCTTGTGGGTTCCTTGGGGTACACAG ATCCACACTACATGAGGACCGGCCTCCCGTCCAAGAAGAACGACATCTACAGCTACGGAGTCGTGGTGTTGGAGCTCGTCACAGGGCGCGAGGCCTTTTC GGAGGAGAAGAGTCAGCTGCTCGCATCGGTGATCGGGCCGATGATTATTCAACAAGAAGAAGGTGGTGGGGGAGTAATTGATGCGGCGGGAATGGTGGAT CCGAGATTGGGTGGGGAGTTTGACGTTGAAGAAGCCAAGGCCATGTTGAGGATTGCAGGGAAGTGTATTGGTGAGGTGAAGCAGCAGGCGCCAACTGTGA GGCCTACTGCCACGGAAATAGTGGAGGCCATGATTGTGAATGTGCCGTCTGCTTTTGCTTCTTCCATGTGCTCTGATGCTGCTGTGAAAGAATTAGGCAA CAATTAA
AA sequence Show only first row Show all	>Lus10019741 pacid=23139188 polypeptide=Lus10019741 locus=Lus10019741.g ID=Lus10019741.BGIv1.0 annot-version=v1.0 MAFGDGCCIPIPNFLTCRRRRRKLTGDQVVAVCDDDDDFVAVYGWPEIERLTKDFNCLIGSGGFSNVYLAAHPPSGGYAAVKVCCAGGDYLSPLFNQELD ILLRLRHPNVVRLMGYSSDQGGALMMEYAANGTLQEKLHGSKSISSNTVNPAPLSWTRRMTIAYQLAQAIEYLHDKCDSQLPIVHGDIKASNVLLDSQLN CKLCDFGSAKIGFSSSVAATRPRRKLVGSLGYTDPHYMRTGLPSKKNDIYSYGVVVLELVTGREAFSEEKSQLLASVIGPMIIQQEEGGGGVIDAAGMVD PRLGGEFDVEEAKAMLRIAGKCIGEVKQQAPTVRPTATEIVEAMIVNVPSAFASSMCSDAAVKELGNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33260			Protein kinase superfamily pro...		Lus10019741 [exp]	0	1
AT4G09830			Uncharacterised conserved prot...		Lus10028692 [exp]	6.5	0.8365
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10020691 [exp]	7.4	0.8014
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Lus10024422 [exp]	9.0	0.8392
AT4G33820			Glycosyl hydrolase superfamily...		Lus10033784 [exp]	12.2	0.7363
AT5G61350			Protein kinase superfamily pro...		Lus10021632 [exp]	17.2	0.7857
AT5G16540	C3HZnF	ZFN3	zinc finger nuclease 3 (.1.2.3...		Lus10031527 [exp]	19.6	0.7265
AT3G52930			Aldolase superfamily protein (...		Lus10027717 [exp]	20.1	0.7833
AT4G35320			unknown protein		Lus10026561 [exp]	21.0	0.8119
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Lus10025311 [exp]	24.1	0.8006
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Lus10027637 [exp]	25.1	0.7511

Compare expression of checked genes

Lus10019741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.