Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13720 339 / 3e-118 Uncharacterised protein family (UPF0114) (.1) AT4G19390 186 / 6e-58 Uncharacterised protein family (UPF0114) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016380 [exp] 440 / 4e-157 AT5G13720 317 / 2e-108 Uncharacterised protein family (UPF0114) (.1) Lus10029480 [exp] 380 / 1e-133 AT5G13720 328 / 2e-113 Uncharacterised protein family (UPF0114) (.1) Lus10037258 [exp] 183 / 5e-57 AT4G19390 245 / 3e-81 Uncharacterised protein family (UPF0114) (.1) Lus10035674 [exp] 179 / 5e-51 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10032866 [exp] 144 / 3e-41 AT4G19390 166 / 6e-50 Uncharacterised protein family (UPF0114) (.1) Lus10018793 [exp] 140 / 2e-40 AT4G19390 169 / 1e-51 Uncharacterised protein family (UPF0114) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G057300 [exp] 374 / 7e-132 AT5G13720 308 / 8e-106 Uncharacterised protein family (UPF0114) (.1) Potri.004G234600 [exp] 190 / 8e-60 AT4G19390 246 / 1e-81 Uncharacterised protein family (UPF0114) (.1) Potri.014G039000 [exp] 152 / 1e-44 AT4G19390 163 / 1e-48 Uncharacterised protein family (UPF0114) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03350 [flax] [poplar] UPF0114 Uncharacterized protein family, UPF0114
Representative CDS sequence Show only first row Show all	>Lus10019743 pacid=23139193 polypeptide=Lus10019743 locus=Lus10019743.g ID=Lus10019743.BGIv1.0 annot-version=v1.0 ATGGCTCTCTATGCATTATTCTGCACTATCCCTCTTCCAATTTCCACCTCAGCTAGCCGGAACTTCATCTCTACTAACCGGAGGAGGAGATTCACTGCAG GAACTTCAGCTGCTTTAAATTCGTCGCTGCCACCCTCGTCCTCTTCCTCCCCTGAATCATCGTCCAAGAAGAACCCATCAAACCCATTTGTTGAATCCGA CTTCAACTACGCACTCGCCAATCCAAATGGCAACCCAGTTGTCCAGTTCGTTAGATCCACCGAGTCCAACATCGAGAGGGCAATCTTTGACTTCCGATTC TTGGCGCTCTTTGCTGTTGTAGGATCCTTGGCTGGCTCACTCCTCTGCTTTCTCAATGGTTGCACTTACATAGTTGATGCCTATAGAGTCTACTGGACAA GTTGTGTGAAAGGAGTCCATTCAGGAAAGATGGTTCTGCGCCTAGTTGAGGCCATCGACGTGTATCTTGCCGGTACAGTGATGCTGATCTTCGGCATGGG ACTGTACGGGCTGTTCATCAGCAATGCATCCACCGATGTCGACCCGAGCGATGACCGTGCCCTGAAAGGATCTTCCTTATTTGGGATGTTTGCCCTCAAG GAAAGGCCCAAGTGGATGAAGATCAGCTCGCTGGACGAGCTGAAGACGAAAGTAGGGCATGTGATTGTGATGATTCTTCTGGTGAAGATGTTTGAGAGGA GCAAGATGGTGACCATAGCCACGGGGATGGATCTTTTGAGCTACTCCGTCTGTATTTTCTTGTCCTCCGCTTCCTTGTACATCCTCCACAATCTGCACAA GTAG
AA sequence Show only first row Show all	>Lus10019743 pacid=23139193 polypeptide=Lus10019743 locus=Lus10019743.g ID=Lus10019743.BGIv1.0 annot-version=v1.0 MALYALFCTIPLPISTSASRNFISTNRRRRFTAGTSAALNSSLPPSSSSSPESSSKKNPSNPFVESDFNYALANPNGNPVVQFVRSTESNIERAIFDFRF LALFAVVGSLAGSLLCFLNGCTYIVDAYRVYWTSCVKGVHSGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNASTDVDPSDDRALKGSSLFGMFALK ERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGMDLLSYSVCIFLSSASLYILHNLHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13720			Uncharacterised protein family...		Lus10019743 [exp]	0	1
AT5G43750		PnsB5, NDH18	Photosynthetic NDH subcomplex...		Lus10021890 [exp]	2.2	0.9569
AT2G33580			Protein kinase superfamily pro...		Lus10041171 [exp]	2.4	0.9531
AT3G10130			SOUL heme-binding family prote...		Lus10022712 [exp]	2.6	0.9213
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10035696 [exp]	3.5	0.9282
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10017574 [exp]	3.9	0.9484
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10026322 [exp]	9.0	0.9164
AT5G19940			Plastid-lipid associated prote...		Lus10026221 [exp]	9.5	0.9249
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Lus10033395 [exp]	9.8	0.9126
AT2G03420			unknown protein		Lus10037118 [exp]	11.3	0.9198
AT1G73885			unknown protein		Lus10005112 [exp]	16.2	0.9223

Compare expression of checked genes

Lus10019743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.