Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12470 454 / 2e-160 Protein of unknown function (DUF3411) (.1) AT2G40400 202 / 1e-58 Protein of unknown function (DUF399 and DUF3411) (.1), Protein of unknown function (DUF399 and DUF3411) (.2) AT3G56140 195 / 5e-56 Protein of unknown function (DUF399 and DUF3411) (.1) AT5G22790 124 / 5e-32 RER1 reticulata-related 1 (.1) AT3G08630 113 / 2e-28 Protein of unknown function (DUF3411) (.1) AT2G37860 114 / 4e-28 LCD1 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) AT3G08640 110 / 3e-27 Protein of unknown function (DUF3411) (.1) AT5G24690 71 / 4e-13 Protein of unknown function (DUF3411) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016379 [exp] 580 / 0 AT5G12470 451 / 1e-158 Protein of unknown function (DUF3411) (.1) Lus10003180 [exp] 449 / 6e-158 AT5G12470 457 / 6e-161 Protein of unknown function (DUF3411) (.1) Lus10009956 [exp] 446 / 4e-157 AT5G12470 459 / 8e-162 Protein of unknown function (DUF3411) (.1) Lus10009845 [exp] 195 / 5e-56 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10040960 [exp] 191 / 2e-54 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10010224 [exp] 188 / 2e-53 AT3G56140 909 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10017422 [exp] 117 / 4e-30 AT3G56140 290 / 3e-92 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10043364 [exp] 107 / 1e-25 AT5G22790 428 / 1e-148 reticulata-related 1 (.1) Lus10003242 [exp] 105 / 1e-24 AT3G08640 372 / 6e-127 Protein of unknown function (DUF3411) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262200 [exp] 519 / 0 AT5G12470 471 / 1e-166 Protein of unknown function (DUF3411) (.1) Potri.001G256300 [exp] 481 / 1e-170 AT5G12470 443 / 3e-155 Protein of unknown function (DUF3411) (.1) Potri.009G051800 [exp] 459 / 5e-162 AT5G12470 467 / 1e-164 Protein of unknown function (DUF3411) (.1) Potri.008G074300 [exp] 194 / 9e-56 AT3G56140 968 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Potri.016G103100 [exp] 129 / 2e-33 AT2G37860 510 / 2e-180 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Potri.009G150400 [exp] 115 / 7e-29 AT5G22790 518 / 0.0 reticulata-related 1 (.1) Potri.016G140700 [exp] 112 / 5e-28 AT3G08640 357 / 5e-123 Protein of unknown function (DUF3411) (.1) Potri.006G111300 [exp] 109 / 5e-27 AT3G08640 349 / 8e-120 Protein of unknown function (DUF3411) (.1) Potri.001G210500 [exp] 75 / 1e-14 AT5G24690 602 / 0.0 Protein of unknown function (DUF3411) (.1) Potri.003G019600 [exp] 72 / 2e-13 AT5G24690 599 / 0.0 Protein of unknown function (DUF3411) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11891 [flax] [poplar] RETICULATA-like Protein RETICULATA-related
Representative CDS sequence Show only first row Show all	>Lus10019744 pacid=23139297 polypeptide=Lus10019744 locus=Lus10019744.g ID=Lus10019744.BGIv1.0 annot-version=v1.0 ATGGCGGCTTTCTCCTCCTCTCACATCCCTACGACCCGCTCCTTCCATTTCGCTTCCCCCTCTGACGCCGCCGCCACCCATCGCCACCACCACAACGTCA GCTTCACTCTCATCACGCGCCGCCCTCCTCCCGCCAGGCGCGGCAGCGGTAGGCCTGAAACCGGGGGTGGAGGCGGAGGCGGAGAAGACGCCGACGCCGA CGACGCTGGATCCCAGAATCGGACGGAGTCCCTTCTTGCATTGGCTGAGGCGGATAGAACGTTGGAGAGCTTGCCCAAGGACTTGTCGGCTGCTATTGAA GCAGGGAGGGTTCCTGGTGCTATCGTGCGCAGGTTCTTTGAGCTTGAGAAGTCGGGTTTTCTCCGATGGTTGCTTCAGTTTGGTGGCTTTAAGGAGCGGT TGCTTGCTGATGACTTGTTCCTGGCTAAGGTTGCAATGGAATGTGGCGTTGGCATCTTCACCAAGACAGCCGCAGAGCTTGAAAAACGAAGGGATAAGTT CACTAAGGAACTCGATTTTGTCTTCGCTGATGTGGTGATGGCCATCATAGCAGATTTTATGCTTGTTTGGCTTCCTGCACCAACTGTTTCTCTCCGGGCT CCTTTAGCAATGAGTGCTGGGCCGATCGCCAAGTTCTTCTTCAACTGTCCCGACAATGCTTTCCAGGTGGCTTTAGCTGGGACATCTTATTCACTTCTGC AGAGAATTGGTGCAATCGCGCGTAACGGAGCGAAGCTCTTTGTGGTTGGAACTAGTGCATCTCTGATTGGTGTAGGTATAACTAACTCATTGATCAATCT ACGGAAAGCGGTGGACAAGTCTTTCGCTGGAGAAGCGGAGGATGTGCCGATCCTATCCACTAGTGCTGCCTATGGCGTCTACATGGCAGTATCTAGCAAC TTGAGGTATCAAATTCTGGCTGGGGTTATCGAACAACGAATCCTGGAGCCTATGCTACATGAGAAGAAGGTCTTGCTGAGTGCAATATGCTTTGCTGTTC GAACCGGAAACACGTTCTTGGGATCATTAATGTGGGTGGATTATGCTCGATGGATCGGGATTCAGAAAGAACGCGATTAG
AA sequence Show only first row Show all	>Lus10019744 pacid=23139297 polypeptide=Lus10019744 locus=Lus10019744.g ID=Lus10019744.BGIv1.0 annot-version=v1.0 MAAFSSSHIPTTRSFHFASPSDAAATHRHHHNVSFTLITRRPPPARRGSGRPETGGGGGGGEDADADDAGSQNRTESLLALAEADRTLESLPKDLSAAIE AGRVPGAIVRRFFELEKSGFLRWLLQFGGFKERLLADDLFLAKVAMECGVGIFTKTAAELEKRRDKFTKELDFVFADVVMAIIADFMLVWLPAPTVSLRA PLAMSAGPIAKFFFNCPDNAFQVALAGTSYSLLQRIGAIARNGAKLFVVGTSASLIGVGITNSLINLRKAVDKSFAGEAEDVPILSTSAAYGVYMAVSSN LRYQILAGVIEQRILEPMLHEKKVLLSAICFAVRTGNTFLGSLMWVDYARWIGIQKERD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12470			Protein of unknown function (D...		Lus10019744 [exp]	0	1
AT5G12470			Protein of unknown function (D...		Lus10016379 [exp]	4.5	0.8149
AT5G60540		EMB2407, ATPDX2...	EMBRYO DEFECTIVE 2407, pyridox...		Lus10041445 [exp]	8.6	0.8032
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10011732 [exp]	16.2	0.7832
AT4G36530			alpha/beta-Hydrolases superfam...		Lus10028315 [exp]	24.6	0.7462
AT4G34240		ALDH3I1	aldehyde dehydrogenase 3I1 (.1...		Lus10015688 [exp]	26.9	0.7726
AT1G31190		IMPL1	myo-inositol monophosphatase l...		Lus10018305 [exp]	36.1	0.7583
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10037694 [exp]	55.6	0.7395
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020849 [exp]	56.0	0.7072
AT2G20920			Protein of unknown function (D...		Lus10005055 [exp]	58.9	0.7219
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10007955 [exp]	60.1	0.7136

Compare expression of checked genes

Lus10019744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.