Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63470 502 / 5e-175 SCPL40 serine carboxypeptidase-like 40 (.1) AT3G52000 408 / 1e-138 SCPL36 serine carboxypeptidase-like 36 (.1) AT3G52020 397 / 4e-134 SCPL39 serine carboxypeptidase-like 39 (.1) AT3G52010 392 / 5e-132 SCPL37 serine carboxypeptidase-like 37 (.1) AT5G08260 390 / 2e-131 SCPL35 serine carboxypeptidase-like 35 (.1) AT3G02110 386 / 4e-130 SCPL25 serine carboxypeptidase-like 25 (.1) AT2G05850 384 / 6e-129 SCPL38 serine carboxypeptidase-like 38 (.1) AT4G30610 382 / 1e-128 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G24000 362 / 1e-120 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT3G07990 361 / 2e-120 SCPL27 serine carboxypeptidase-like 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016377 [exp] 936 / 0 AT3G63470 501 / 2e-174 serine carboxypeptidase-like 40 (.1) Lus10019748 [exp] 874 / 0 AT3G63470 471 / 2e-161 serine carboxypeptidase-like 40 (.1) Lus10019749 [exp] 802 / 0 AT3G63470 478 / 1e-165 serine carboxypeptidase-like 40 (.1) Lus10005327 [exp] 613 / 0 AT3G63470 449 / 1e-154 serine carboxypeptidase-like 40 (.1) Lus10039582 [exp] 541 / 0 AT3G52020 372 / 1e-121 serine carboxypeptidase-like 39 (.1) Lus10015382 [exp] 380 / 2e-127 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1) Lus10019954 [exp] 379 / 6e-127 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015489 [exp] 378 / 1e-126 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10008793 [exp] 375 / 2e-126 AT3G63470 176 / 7e-50 serine carboxypeptidase-like 40 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G055900 [exp] 535 / 0 AT3G63470 570 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.001G261100 [exp] 515 / 3e-180 AT3G63470 611 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.009G056000 [exp] 506 / 1e-176 AT3G63470 557 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.006G183200 [exp] 387 / 1e-130 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G120100 [exp] 386 / 3e-130 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.007G072300 [exp] 381 / 4e-128 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1) Potri.017G094100 [exp] 375 / 7e-126 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.018G105700 [exp] 367 / 8e-123 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.010G220100 [exp] 366 / 2e-122 AT3G07990 735 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.008G041700 [exp] 365 / 4e-122 AT2G35770 608 / 0.0 serine carboxypeptidase-like 28 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10019747 pacid=23139216 polypeptide=Lus10019747 locus=Lus10019747.g ID=Lus10019747.BGIv1.0 annot-version=v1.0 ATGAAGCCCACAATTGTCATTGCCGTCGTTGCCCTTCTCGCAGTACTGTCTTCATCTTTCCCGACGCCGGCGCATTGCCGGGTCGACCAGCTGAAAGACT TGTTGAAAGTGAACTTCAATAACCAGTTCGAAACTAGCTCACTGTTTAAGCCGGTCCAGTACGAGGAAATTGCTTCTAGACTACATGATGAGGTTGACCT CCAACAAGCTGGGGCGGCGTCGAAAGACGGCGACCTTATCGACCGGTTGCCGGGGCAGCCGCTGGTGTCGTTCAAGCAGTACGGCGGGTACGTTAGCGTT GACTCGTTGACCGATAGGAATATGTATTACTACTTCGCCGAAGCTCAGCATCCGAAGAAGGACGAATTGCCTCTCGTTCTCTGGCTCAACGGAGGTCCCT GCTGCTCATCTTTGGGGTATGGAGCAATGACAGAGCTAGGGCCATACAGAGTGGCTAGTGATGGACAAACTTTGTACAGAAATAAATATTCTTGGAATCG AGTTGTGAATCTTCTCTTCGTCGAGTCGCCGGCCGGAGTTGGTTTCTCCTACTCGAATAACTCGTCGGACTACACAACTGGAGACATCAAGACAGCTCAA GATAACTTTGTCTTCCTGTATAACTGGCTCCAGAGATTCCCGGAATACAAAGGTCGGGATTTTTACATCGCCGGAGAAAGCTACGCCGGCCATTATGTTC CTCAACTTGCTCAAAACATCGTTCTCAATAGAGAAAAAACCCTCGACAACTCCATCAACCTCAAGGGCATCATGATAGGAAATGCTGTGACTAATCGTGA AACGGACGGCCTAGGAATGTATGATTTCTTCGGTAACCACGGCCTGGCTTCGCCGGAAGCAGTCTCGGCCGTTCGCAGACACTGCAACTTCTCACCGGAG TTCACCGGAAATCAAACCGATGAATGTTATGCTGCCGCTGATGAAGTCGATGCCTCGATAGAAGACATCTACATTTACAATATATACGTCGAAGAGTGCA AGTCCTACACCGGCCCCACCAAGGCTCCCCTCCCTTTCTCCATAACAGAGTTTGACGAGTGCAGTGAATATTACGTAGTAAATTATTTGAATCGAGAGGA TGTACAGGAGGCAATGCATGCAAACACAACCAAGATTCCATATAGCTGGTCACCCTGCGCTGGAAATCGTATCAACTATAACCAACATGCACACTCGACC CTCGATGAAATCCGAAACATGTTGGATAACAACGTTACCGTTATGATTTATAGCGGTGACATCGATGGAAGGGTGCCGTTTACATCGTCGCAATACTCGA TTCAGGCTATGAACCTCACTGTGGATACCAAGTTCCATCCTTGGTACATTGCTGGACAGGTTGGAGGGTACACGGAGACGTACAAGGGGGGGTTGACATT TGCGACGGTGCGGGGAGCAGGGCATGTGGTTCCGAGCTATCAGGGACTGCGGGGGCTCGCACTCTTCATGCATTTCATTAATGGAACTCCTTTGCCCAAC AGCAAAAGACACTAA
AA sequence Show only first row Show all	>Lus10019747 pacid=23139216 polypeptide=Lus10019747 locus=Lus10019747.g ID=Lus10019747.BGIv1.0 annot-version=v1.0 MKPTIVIAVVALLAVLSSSFPTPAHCRVDQLKDLLKVNFNNQFETSSLFKPVQYEEIASRLHDEVDLQQAGAASKDGDLIDRLPGQPLVSFKQYGGYVSV DSLTDRNMYYYFAEAQHPKKDELPLVLWLNGGPCCSSLGYGAMTELGPYRVASDGQTLYRNKYSWNRVVNLLFVESPAGVGFSYSNNSSDYTTGDIKTAQ DNFVFLYNWLQRFPEYKGRDFYIAGESYAGHYVPQLAQNIVLNREKTLDNSINLKGIMIGNAVTNRETDGLGMYDFFGNHGLASPEAVSAVRRHCNFSPE FTGNQTDECYAAADEVDASIEDIYIYNIYVEECKSYTGPTKAPLPFSITEFDECSEYYVVNYLNREDVQEAMHANTTKIPYSWSPCAGNRINYNQHAHST LDEIRNMLDNNVTVMIYSGDIDGRVPFTSSQYSIQAMNLTVDTKFHPWYIAGQVGGYTETYKGGLTFATVRGAGHVVPSYQGLRGLALFMHFINGTPLPN SKRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10019747 [exp]	0	1

Compare expression of checked genes

Lus10019747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.