Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63470 438 / 1e-148 SCPL40 serine carboxypeptidase-like 40 (.1) AT3G52000 369 / 5e-122 SCPL36 serine carboxypeptidase-like 36 (.1) AT5G08260 357 / 2e-117 SCPL35 serine carboxypeptidase-like 35 (.1) AT3G52020 355 / 3e-116 SCPL39 serine carboxypeptidase-like 39 (.1) AT3G52010 348 / 9e-114 SCPL37 serine carboxypeptidase-like 37 (.1) AT2G05850 344 / 4e-112 SCPL38 serine carboxypeptidase-like 38 (.1) AT4G30610 335 / 3e-109 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT3G02110 332 / 8e-108 SCPL25 serine carboxypeptidase-like 25 (.1) AT5G23210 329 / 3e-106 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT2G35770 323 / 2e-104 SCPL28 serine carboxypeptidase-like 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019747 [exp] 833 / 0 AT3G63470 502 / 4e-175 serine carboxypeptidase-like 40 (.1) Lus10016377 [exp] 823 / 0 AT3G63470 501 / 2e-174 serine carboxypeptidase-like 40 (.1) Lus10019749 [exp] 775 / 0 AT3G63470 478 / 1e-165 serine carboxypeptidase-like 40 (.1) Lus10005327 [exp] 594 / 0 AT3G63470 449 / 1e-154 serine carboxypeptidase-like 40 (.1) Lus10039582 [exp] 521 / 2e-178 AT3G52020 372 / 1e-121 serine carboxypeptidase-like 39 (.1) Lus10008793 [exp] 346 / 1e-113 AT3G63470 176 / 7e-50 serine carboxypeptidase-like 40 (.1) Lus10019954 [exp] 331 / 5e-107 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015489 [exp] 330 / 8e-107 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015382 [exp] 330 / 1e-106 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G055900 [exp] 470 / 4e-161 AT3G63470 570 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.001G261100 [exp] 464 / 7e-159 AT3G63470 611 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.009G056000 [exp] 446 / 1e-151 AT3G63470 557 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.007G072300 [exp] 353 / 7e-116 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1) Potri.008G041700 [exp] 335 / 4e-109 AT2G35770 608 / 0.0 serine carboxypeptidase-like 28 (.1) Potri.006G183200 [exp] 334 / 1e-108 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G091700 [exp] 334 / 2e-108 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.004G120100 [exp] 332 / 8e-108 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.005G091800 [exp] 323 / 2e-104 AT5G23210 585 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.018G105700 [exp] 320 / 2e-103 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10019748 pacid=23139236 polypeptide=Lus10019748 locus=Lus10019748.g ID=Lus10019748.BGIv1.0 annot-version=v1.0 ATGATAGGAAATGCAGTGATTCATGATGAAACAGATAGCCTGGGAGTGTTCGATTTCATCAGGAACCACGGCTTGGCTTCATCGGAAGTGGTCGCTGAAG TTCACAGACGCTGCGACTTCTCATCGGAATATCAAACAGAAGAATGTTTTGTTGCTCGTGATGAAGTTTACGCCTCCATAGATGACATCTTCCCTTACAA TATCTATGCCGAAGACTGCACTTCCTACACCGGCCCCACCAAGACTCCCCTCCCATTTTCAGTTAGTCCGTACTACGAGTCCACAATTGTCATTGCCGTC GTTGCCCTTGTCGTGGTACTGTCTTCATGTTTCCCGGCGCCGGCTCATTGCCGTCAGAACCGGGCCGACCAGCTTAAAGACTTGATGAAAGTGAAGCTCA ATGACCAGTTCGAAACTAGCTCACCGTTTAAGCCGGTCCAGTACGAGGAAATTGCTTCTAGACTACATGATGAGGTTGACCTCCAACAAGCTGGGGCGGC GTCGAAAGACGGCGACCTTATCGTCCGGTTGCCGGGGCAGCCTACGGTGTCGTTCAAGCAGTACGGCGGGTACGTTAACGTTGACCCGTTGACCGATACA AACATGTATTACTACTTCGCCGAAGCTCAGCATCCTAACAAGGACGAATTGCCTCTCGTTCTCTGGCTCAACGGAGGGCCCACCTGCTCATCTTTGGGGT ACGGAGCAATGACAGAGCAAGGGCCATTCCGAATGGCTAGCGACGGGAAAACTCTGCATGCAAATGAATACTCTTGGAATCGAATTGTAAATCTTCTATT TGTGGAGTCGCCGGCCGGGGTTGGATTCTCCTACTCGAATACGTCGTCGAATTACACAAGTGGAGACATCAAGACAGCTCAAGATAACTTTATCTTCTTG TATAACTGGCTCCGGAGATTCCCCGAATACAAAGGTCGGGATTTCTACATCGCCGGAGAAGGCTACGCTGGCCATTATGTTCCTCAACTTGCTCAAACCA TCGTCGTCAATAGGCTGAAAACCCAGGACAACTCCATCAACCTCAAGGGCATCATGATGGGGAATGCAGTGCTTAATCGTGAAACGGACCGCTTAGGAAT ATACGATTTCCTCGGTAACCACGGTCTAGCTTCACCGGAAGCAGTCTCGGCCGTTCGCGAACACTGCAACTTCTCACCGGAGTTCACCGGAAATCAAACG GATGGATGCTTTGCTGCCGGTGATGAAGTGTTTGCCTCTGCGAAAGACATCTTCATTCACAATATCTACGCCGAAGATTGCAAGTCCTACACCGGCCCCA CCAAGGCTCCCCTTCCTTTCTCCATAACAACGTTCGACGAGTGCAGTGTTAACTACGTAGAATACTATCTGAATCGAGAGGATGTCCAGGAGGCAATGCA CGCAAACACGACCAAAATTGCTTATCCTTGGTCTCCCTGTTCTAGAGAGCGCATCGACTATAACCAGCATGCACACTCGGTCCTCGATGAAATCCAAAAC ATGTTAGATAACAACGTTACCGTTATGATTTATAGCGGTGACATCGATAGAAGGGTGCCGTTTACATCGTCGCAATACTCGATTAAGGCTATGAACCTCA CTGTGGATACCAAGTTCCATCCTTGGTACATTGCTGGACAGGTTGGAGGGTACACGGAGACGTACGAGGGAGGGTTGACATTTGCGACGGTGAGGGGAGC AGGGCATGAAGTTCCGAGCTATCAGGGACTGCGGGGGCTTTCGTTGTTCATGCATTTCATTGATGGCACTCCTCTGCCCAACAGCAAAGGACATTGA
AA sequence Show only first row Show all	>Lus10019748 pacid=23139236 polypeptide=Lus10019748 locus=Lus10019748.g ID=Lus10019748.BGIv1.0 annot-version=v1.0 MIGNAVIHDETDSLGVFDFIRNHGLASSEVVAEVHRRCDFSSEYQTEECFVARDEVYASIDDIFPYNIYAEDCTSYTGPTKTPLPFSVSPYYESTIVIAV VALVVVLSSCFPAPAHCRQNRADQLKDLMKVKLNDQFETSSPFKPVQYEEIASRLHDEVDLQQAGAASKDGDLIVRLPGQPTVSFKQYGGYVNVDPLTDT NMYYYFAEAQHPNKDELPLVLWLNGGPTCSSLGYGAMTEQGPFRMASDGKTLHANEYSWNRIVNLLFVESPAGVGFSYSNTSSNYTSGDIKTAQDNFIFL YNWLRRFPEYKGRDFYIAGEGYAGHYVPQLAQTIVVNRLKTQDNSINLKGIMMGNAVLNRETDRLGIYDFLGNHGLASPEAVSAVREHCNFSPEFTGNQT DGCFAAGDEVFASAKDIFIHNIYAEDCKSYTGPTKAPLPFSITTFDECSVNYVEYYLNREDVQEAMHANTTKIAYPWSPCSRERIDYNQHAHSVLDEIQN MLDNNVTVMIYSGDIDRRVPFTSSQYSIKAMNLTVDTKFHPWYIAGQVGGYTETYEGGLTFATVRGAGHEVPSYQGLRGLSLFMHFIDGTPLPNSKGH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10019748 [exp]	0	1
AT4G02210			unknown protein		Lus10008312 [exp]	1.4	0.8868
					Lus10027564 [exp]	1.7	0.8098
					Lus10031558 [exp]	2.0	0.8661
AT3G13310			Chaperone DnaJ-domain superfam...		Lus10032957 [exp]	4.2	0.7122
AT2G31500		CPK24	calcium-dependent protein kina...		Lus10025570 [exp]	7.7	0.7163
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10009292 [exp]	8.5	0.6963
					Lus10007169 [exp]	16.4	0.6801
AT4G33860			Glycosyl hydrolase family 10 p...		Lus10033787 [exp]	17.2	0.8069
AT3G01570			Oleosin family protein (.1)		Lus10003742 [exp]	20.5	0.6477
AT2G14378			Protein of unknown function (D...		Lus10019428 [exp]	20.5	0.6300

Compare expression of checked genes

Lus10019748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.