Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60910 393 / 4e-140 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G17365 201 / 3e-64 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G34360 102 / 4e-26 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G31740 95 / 6e-22 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G66680 57 / 3e-09 AR401 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016376 [exp] 435 / 2e-156 AT3G60910 327 / 2e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016375 [exp] 201 / 4e-66 AT3G60910 164 / 7e-52 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016656 [exp] 99 / 3e-23 AT2G31740 895 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033577 [exp] 59 / 1e-09 AT1G66680 385 / 3e-132 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10017619 [exp] 52 / 2e-07 AT1G66680 471 / 1e-167 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G261000 [exp] 402 / 1e-143 AT3G60910 387 / 2e-137 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.009G055600 [exp] 377 / 3e-133 AT3G60910 378 / 1e-133 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G153200 [exp] 213 / 3e-69 AT3G17365 313 / 1e-108 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.004G150200 [exp] 115 / 7e-31 AT4G34360 385 / 1e-136 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G317700 [exp] 91 / 1e-20 AT2G31740 886 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G062400 [exp] 47 / 3e-06 AT1G66680 414 / 4e-145 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G165700 [exp] 42 / 0.0002 AT1G78140 407 / 1e-142 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G095100 [exp] 42 / 0.0003 AT1G78140 442 / 2e-156 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10019750 pacid=23139306 polypeptide=Lus10019750 locus=Lus10019750.g ID=Lus10019750.BGIv1.0 annot-version=v1.0 ATGATGAGGGATGAGTCCAGCTTGAACACATACAACTATGGCGACGCACTGTATTGGGACGCTCGATACGTGGAAGAGGGTGGGAGTTTCGATTGGTATC AGCGTTACTTTTCCCTTCGCCCTTTCGTCCGCCACTACGCACCTACTTCATCTCCCGTCCTCATGGTTGGCTGTGGCAATGCCCTGATGTCAGAGGACAT GGTGAAGGATGGGTATGAAGACATAATGAACATTGATATCTCCTCGGTGGCGATTGAAATGATGAGCAAAAAATATGAGTACATCCCTCAGCTCAAATAC ATGAAGATGGATGTTAGAGATATGAGTGACTTCGCTGATGATTCATTTGGTACTGTCATTGACAAGGGAACTCTAGATTCTTTAATGTGTGGCAGCGATG CCATGATTAGTGCTGCTCAGATGCTTGGAGAAGTCAGCAGGCTGCTGAAGCCTGGAGGAACTTATATGTTGATAACCTATGGCGACCCCAAGGTAAGAAT GCCTCATTTGATGCGGCCAGCATACAATTGGAAGATTTTGCTGTACATAATACCAAGGCCAGGGTTCCAAAAACCAGCAGCTAATCAATCTTCAGCTCGA GCATTTTTGGAACCCGTACCAATCACAGAGAGTGGCTTACTTCCAGCAGACTATGCACTGGAAGATCCAGACTCACACTTCATCTACATATGCCACAAAA TGGACGGGGATTCAGAGTTGAACAATATCTCGTCCTACCCTTTGACGGCTGATATCTCATTCTCATAG
AA sequence Show only first row Show all	>Lus10019750 pacid=23139306 polypeptide=Lus10019750 locus=Lus10019750.g ID=Lus10019750.BGIv1.0 annot-version=v1.0 MMRDESSLNTYNYGDALYWDARYVEEGGSFDWYQRYFSLRPFVRHYAPTSSPVLMVGCGNALMSEDMVKDGYEDIMNIDISSVAIEMMSKKYEYIPQLKY MKMDVRDMSDFADDSFGTVIDKGTLDSLMCGSDAMISAAQMLGEVSRLLKPGGTYMLITYGDPKVRMPHLMRPAYNWKILLYIIPRPGFQKPAANQSSAR AFLEPVPITESGLLPADYALEDPDSHFIYICHKMDGDSELNNISSYPLTADISFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60910			S-adenosyl-L-methionine-depend...		Lus10019750 [exp]	0	1
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10026925 [exp]	4.2	0.6968
AT5G25510			Protein phosphatase 2A regulat...		Lus10012116 [exp]	10.8	0.6981
AT5G32440			Ubiquitin system component Cue...		Lus10027699 [exp]	12.0	0.6651
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Lus10039098 [exp]	15.2	0.7005
					Lus10026028 [exp]	17.7	0.6719
AT5G23200			unknown protein		Lus10017393 [exp]	24.0	0.6663
AT2G05250			DNAJ heat shock N-terminal dom...		Lus10001171 [exp]	24.4	0.6820
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10023164 [exp]	26.5	0.6589
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10011716 [exp]	41.9	0.6696
AT1G11840		ATGLX1	glyoxalase I homolog (.1.2.3.4...		Lus10000007 [exp]	55.5	0.6530

Compare expression of checked genes

Lus10019750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.