Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63460 1074 / 0 EMB2221 transducin family protein / WD-40 repeat family protein (.1.2.3) AT1G18830 590 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT4G35050 74 / 2e-13 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT2G16780 69 / 5e-12 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT5G58230 69 / 5e-12 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 58 / 4e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT4G33270 56 / 9e-08 AtCDC20.1, CDC20.1 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) AT4G33260 56 / 1e-07 AtCDC20.2, CDC20.2 cell division cycle 20.2, Transducin family protein / WD-40 repeat family protein (.1.2) AT4G11110 56 / 1e-07 SPA2 SPA1-related 2 (.1) AT5G27570 55 / 2e-07 AtCDC20.5 cell division cycle 20.5, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016373 [exp] 1766 / 0 AT3G63460 1299 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10039578 [exp] 1549 / 0 AT3G63460 1380 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10005323 [exp] 934 / 0 AT3G63460 885 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10005322 [exp] 622 / 0 AT3G63460 473 / 2e-156 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10027848 [exp] 70 / 3e-12 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10033459 [exp] 69 / 9e-12 AT5G58230 723 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020917 [exp] 69 / 9e-12 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10005074 [exp] 69 / 1e-11 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10020916 [exp] 68 / 2e-11 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G055400 [exp] 1300 / 0 AT3G63460 1351 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Potri.001G260900 [exp] 1282 / 0 AT3G63460 1347 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Potri.004G175300 [exp] 71 / 1e-12 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.009G135100 [exp] 71 / 2e-12 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.002G216200 [exp] 70 / 4e-12 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G179700 [exp] 69 / 8e-12 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G144400 [exp] 57 / 7e-08 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.019G096900 [exp] 55 / 1e-07 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G026800 [exp] 52 / 2e-06 AT5G13480 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G050100 [exp] 52 / 2e-06 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF07304 [flax] [poplar] SRA1 Steroid receptor RNA activator (SRA1)
Representative CDS sequence Show only first row Show all	>Lus10019752 pacid=23139222 polypeptide=Lus10019752 locus=Lus10019752.g ID=Lus10019752.BGIv1.0 annot-version=v1.0 ATGCATGGTCGGTTTCCCAGTCCTGAATCTAAAGATGGAGCATTTGTTGCTTCTCTGTCAAATCATAAAGGCCCTGTCCGTGGGCTTGCATTCAATTCCT TCACCCCAAATTTACTGGCATCGGGTGCTGATGATGGTGAGATTTGCATCTGGGACTTAGCCTCGCCTGGGGAACCTTCCCATTTTCCACCTCTGAAGGG TGCTGCCTCACAAGGTGAAATCTCTTACGTTTCTTGGAATAACAAGGTCCAACACATACTGGCATCTACATCACATAATGGGATCACTGTGGTTTGGGAC TTGAAGAAGCAGAAACAAGTTATATCTGTGTCAGATTCAATGAGTAGGCGGTCCTCTGTTTTGCAATGGCATCCTGATGTTGCCACTCAGCTATTTGTTG CATCAGATGATGACAGCTCTCCTACTTTGAAGCTATGGGATATGCGGAATATTCTGAAACCTGTCAATGAGTTGGTTGGACACACCAAAGGTGTGATTGC TATGGCATGGTGCCCCAATGATAGCTCGTATTTGCTTACTTGTGCTAAAGATAATCGGACTATCTGCTGGAACACTGTTACTGGAGAGATTGTTTGTGAG TTACCGTCAGGCAACAATTGGAACTTCGATGTGCATTGGTACTCTAAGATACCAGGAGTAATAGCTGCATCTTCATTTGATGGAAAGATTGGGCTTTACA ATATTGAGGGATGCAGTCATTATGGGATTGGAGAGGCCGATTTTGGAGCAGCCCCAAAGTGGTATAAACGCCCTGCTGGTGTGTCCTTTGGCTTTGGAGG GAAGCTTTTGTCATTTCATCCTAAGTCATCCACTACAGGGGGTTCAGAGGTACTTCTGCACAATCTGGTGACGGAACAATCCTTAGTCAGTCGGTCATCT GAATTTGAATCTGCAATGAACAATGGGGAGAAATCCTCGCTGAAGTCCTTATGTGAAAGAAAATCTCAAGAGTCTGAGTCGGAGGATGAGCGACAGACAT GGGGCTTTCTCAAGGTTATGTTTGAAGAAGATGGGACTGCAAGGTCAAAGATGCTTAACCATCTTGGTTTTAGTTTGCCTGTTGAAGAAAAACCTGCAGT TGTCGATGATCTTAGCCAGGAAATCAATGCTCTTCAGCTGGCTGATGTTGCGACTGATAAGGTGGGATTTGAAAAAGAGAAAGAGTCTGGCATGTTTGCG GGAGATGACGACGAAGATTTCTTTAACAATCTTCCGAGCCCAAAAGTCGATACACCTGTTTCAGTTGCAGCTGAGGTCGCTTCTCCTCACATTGGGGAAG AAGACAGACCAGAACATGATGGGCTGGATGAGAGTGTTGATGCATCATTTGATGATGATATTCAGCGTGCTTTGGTTGTGGGAGACTACAAGGGGGCAGT TGCACAGTGCATGTCTGCAAATAAGAAGGATCATGCTTTGCTTATTGCACATCTTGGTGGACCTGCTTTGTGGGAGAAAACCCGTGATCAGTGTCTCAAA ACGAACCGGTCACCTTACATGAAGATTGTTTCTGCAATGGTGAATAATGACCTTCTAAGTCTTGTAAATACAAGGCCTCTGAAATATTGGAAAGAAACAC TTGCTCTTCTATGCACATTTGCTCAAAATGAGGAATGGAGCATGCTGTGCGACGTGCTTGCGTCAAAACTATTGCGCTCTGGGAATACATTGGCTGCGAC GCTTTGTTATATATGTGCCGGGAATATAGACAAGACTGTTGAAATTTGGTCCAGAAGTTTGTCATGTGACAATGAAGGAAAATCTTATGTTGACCTTCTT CAGGATTTGATGGAGAAGACCATTGTTTTTGCTTTGGCTAGCGGGCAAAAGCGCTATAGTGCATCTCTGTGCAAGCTTGTTGAGAAATATGCTGAGATTT TGGCAAGTCAAGGGCTTTTAACAACTGCTATGGAGTACCTGAAACTCTTGGGTTCTGAGGAATTGTCTCCTGAACTTTCTATCTTAAGAGATCGCATTGC ACTTTCCACTGAGCCTGAGGAACAGACAACTGCTGCTTATGACAATTCACAATATCAGACTCAACAATCCAGTTTTAGTCCGGCTGATGCATCTAACTCC TACTATCGGGAAACAACCCAACCACATTTGCAGCTCCATGGTGTTCCTAACTCTGCATACGGAGACGGTTATCAACAGAATCTTGGTTCTTCGTACGGAG GAGGATATGGAGCTATGCCGTATCAACCTGCTGTCCAGGCTGCTCCTTACCAGCCTGCTGTACCTTCTCAAATGTTTGTTCCAGCTCCAGCCCCAACGCC TCAGATTCCTCAGAGTTTTGCCCCAGCTCCTTCTAGCACTCAACAAGCTGTAAGGACTTTTGTTCCTTCAAGCGCTCCAATCGTAAGAAATGCAGATCAG TACCAGCAGCAGCAGCAGCAGCAACCTACATTGGGATCTCAGTTGTATTCCGGGGGTTCAAATCCTACATTCCAACCTATGCAGCCTCACACGCCTCCTC ATGGGCGGGTCGGAGCTCCTATGGGAAGGCCGAATGTCCCAGGATTTAGACCTGAAACAAATTCTATCCATAGACCAATGAACAATTCGTTTCAACCAGC TACTCCTAGTCAGTCGCCACCCGTCCAACCAGCTGCAGCACCTGCTCCACCTCCTACTGTACAAACGGCGGATACTTCAAAAGTTCCTGCTCACCACAAG CCAGTTATTACAACATTGACGAGGCTTTTCAACGAGACATCGGAAGTTTTGGGAGGTTCACGAGCTATGGGGGCGAAGAAGAGAGAAATAGAAGACAATT CAAAGAAAATCGGTGCCCTGTTTGCTAAACTCAACAGTGGGGATATCTCCAAAAACGCTTCGGACAAGCTTATTCAGCTGTGCCAGGCACTGGAAAAAGG CGACTTCATCACTGCTCTGCAAATTCAGGTGTTGCTGACGACTAGCGAGTGGGACGAATGCAACTTCTGGTTAGCCACCCTGAAACGAATGATCAAGACC CGACAGGTTGCTGGTGTAAGAAGTTAG
AA sequence Show only first row Show all	>Lus10019752 pacid=23139222 polypeptide=Lus10019752 locus=Lus10019752.g ID=Lus10019752.BGIv1.0 annot-version=v1.0 MHGRFPSPESKDGAFVASLSNHKGPVRGLAFNSFTPNLLASGADDGEICIWDLASPGEPSHFPPLKGAASQGEISYVSWNNKVQHILASTSHNGITVVWD LKKQKQVISVSDSMSRRSSVLQWHPDVATQLFVASDDDSSPTLKLWDMRNILKPVNELVGHTKGVIAMAWCPNDSSYLLTCAKDNRTICWNTVTGEIVCE LPSGNNWNFDVHWYSKIPGVIAASSFDGKIGLYNIEGCSHYGIGEADFGAAPKWYKRPAGVSFGFGGKLLSFHPKSSTTGGSEVLLHNLVTEQSLVSRSS EFESAMNNGEKSSLKSLCERKSQESESEDERQTWGFLKVMFEEDGTARSKMLNHLGFSLPVEEKPAVVDDLSQEINALQLADVATDKVGFEKEKESGMFA GDDDEDFFNNLPSPKVDTPVSVAAEVASPHIGEEDRPEHDGLDESVDASFDDDIQRALVVGDYKGAVAQCMSANKKDHALLIAHLGGPALWEKTRDQCLK TNRSPYMKIVSAMVNNDLLSLVNTRPLKYWKETLALLCTFAQNEEWSMLCDVLASKLLRSGNTLAATLCYICAGNIDKTVEIWSRSLSCDNEGKSYVDLL QDLMEKTIVFALASGQKRYSASLCKLVEKYAEILASQGLLTTAMEYLKLLGSEELSPELSILRDRIALSTEPEEQTTAAYDNSQYQTQQSSFSPADASNS YYRETTQPHLQLHGVPNSAYGDGYQQNLGSSYGGGYGAMPYQPAVQAAPYQPAVPSQMFVPAPAPTPQIPQSFAPAPSSTQQAVRTFVPSSAPIVRNADQ YQQQQQQQPTLGSQLYSGGSNPTFQPMQPHTPPHGRVGAPMGRPNVPGFRPETNSIHRPMNNSFQPATPSQSPPVQPAAAPAPPPTVQTADTSKVPAHHK PVITTLTRLFNETSEVLGGSRAMGAKKREIEDNSKKIGALFAKLNSGDISKNASDKLIQLCQALEKGDFITALQIQVLLTTSEWDECNFWLATLKRMIKT RQVAGVRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019752 [exp]	0	1
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10007887 [exp]	1.0	0.9439
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028093 [exp]	1.7	0.9112
AT1G22870			Protein kinase family protein ...		Lus10030346 [exp]	2.6	0.8870
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10039855 [exp]	3.0	0.8814
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012076 [exp]	3.5	0.9039
AT4G24840			unknown protein		Lus10009908 [exp]	3.5	0.9113
AT5G53480			ARM repeat superfamily protein...		Lus10008863 [exp]	4.9	0.8963
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10039246 [exp]	5.2	0.8585
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Lus10023306 [exp]	5.3	0.8690
AT5G11040		AtTRS120	TRS120 (.1)		Lus10008127 [exp]	5.5	0.8988

Compare expression of checked genes

Lus10019752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.