Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51990 174 / 2e-52 Protein kinase superfamily protein (.1) AT1G28390 128 / 4e-34 Protein kinase superfamily protein (.1.2) AT3G59420 100 / 9e-24 ACR4 crinkly4 (.1) AT5G23170 96 / 9e-23 Protein kinase superfamily protein (.1) AT3G09780 81 / 3e-17 CCR1, ATCRR1 CRINKLY4 related 1 (.1) AT5G47850 78 / 3e-16 CCR4 CRINKLY4 related 4 (.1) AT1G07550 78 / 3e-16 Leucine-rich repeat protein kinase family protein (.1) AT1G21245 74 / 3e-16 Protein kinase superfamily protein (.1) AT5G65530 77 / 5e-16 Protein kinase superfamily protein (.1) AT5G18910 77 / 8e-16 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016371 [exp] 437 / 1e-153 AT3G51990 402 / 3e-138 Protein kinase superfamily protein (.1) Lus10039770 [exp] 124 / 2e-32 AT1G28390 379 / 2e-127 Protein kinase superfamily protein (.1.2) Lus10019948 [exp] 96 / 1e-23 AT3G51990 174 / 3e-52 Protein kinase superfamily protein (.1) Lus10000764 [exp] 98 / 5e-23 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10015478 [exp] 93 / 6e-22 AT3G51990 169 / 2e-49 Protein kinase superfamily protein (.1) Lus10015956 [exp] 93 / 3e-21 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10011098 [exp] 86 / 1e-18 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 84 / 3e-18 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 83 / 8e-18 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G055200 [exp] 278 / 1e-91 AT3G51990 409 / 7e-141 Protein kinase superfamily protein (.1) Potri.001G260800 [exp] 274 / 7e-91 AT3G51990 419 / 5e-146 Protein kinase superfamily protein (.1) Potri.005G158600 [exp] 139 / 3e-38 AT1G28390 397 / 3e-134 Protein kinase superfamily protein (.1.2) Potri.004G221800 [exp] 114 / 8e-30 AT5G23170 273 / 1e-89 Protein kinase superfamily protein (.1) Potri.003G010300 [exp] 110 / 3e-28 AT5G23170 270 / 3e-88 Protein kinase superfamily protein (.1) Potri.017G029900 [exp] 102 / 2e-24 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.007G128400 [exp] 99 / 2e-23 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.014G136300 [exp] 85 / 1e-18 AT5G35960 556 / 0.0 Protein kinase family protein (.1) Potri.006G166600 [exp] 82 / 1e-17 AT2G18890 463 / 3e-163 Protein kinase superfamily protein (.1.2) Potri.010G213200 [exp] 81 / 5e-17 AT3G46290 808 / 0.0 hercules receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10019753 pacid=23139299 polypeptide=Lus10019753 locus=Lus10019753.g ID=Lus10019753.BGIv1.0 annot-version=v1.0 ATGGGGTATCTCGATCCTTGCTACGTCACGCCCGATAACTTGAGCACCAAAACTGATGTTTTCAGCTTTGGGATTCTGTTGCTGGAGATTATCAGTGGGA GGAAAGCCATTGATGTGGATCATTCCCCTGCTTCCATTGTCGATTGGGCGATCCCTCTGTTGAAAAGAGGGAAGCTTGGTCTTATCTACGATCTGAGGAT TCCGTTACTCAAGGATCCATTGATCAAGAGGCAGCTTGTTCTGATTGCTTCCAAATGTGTTAGGTCTTGCAGGGAGAGGAGGCCGTCTATGAAGGAAGTT GTTGATTGGTTGAACGCATTGAGCAAGCTGGTTCCTCTCCATTCGTGGAACGGGTTCAACAATCCCTGTATGATGGTCGAGACCATGGAGCGTCCTGCTG AATTGAGGAACTGCGAATTTGAATTGAGAACGGCGAAGGATTCAAGAAGGGTGTTCTCGGACTTGGGGTCGAGAAGCAGTTTGATCGACCTCATGGCTGG TGGTGAGTCTGATTCGATGAGACAGCCCTCGAGTCGGTTTTCGCGTTCCATATTCGGTAGTGCGAGGTATGTTGCAGGAGGAGGAAGAAGAACTACACAG TCCAAGACTGTGAGTAGTAGTAATAGTAGTGATAACAAAGTTGTTTCTTGTATGCGGAGAAACAAATCAGTCGGGGATGGTTCGAAGTTCGTCTCTGAAA CAAAAGAGAAAGCTCCTCCTGCTCATTCGAGACTTAGGGGTGAAAGGTTGGTAAGCTCTTCCTGA
AA sequence Show only first row Show all	>Lus10019753 pacid=23139299 polypeptide=Lus10019753 locus=Lus10019753.g ID=Lus10019753.BGIv1.0 annot-version=v1.0 MGYLDPCYVTPDNLSTKTDVFSFGILLLEIISGRKAIDVDHSPASIVDWAIPLLKRGKLGLIYDLRIPLLKDPLIKRQLVLIASKCVRSCRERRPSMKEV VDWLNALSKLVPLHSWNGFNNPCMMVETMERPAELRNCEFELRTAKDSRRVFSDLGSRSSLIDLMAGGESDSMRQPSSRFSRSIFGSARYVAGGGRRTTQ SKTVSSSNSSDNKVVSCMRRNKSVGDGSKFVSETKEKAPPAHSRLRGERLVSSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51990			Protein kinase superfamily pro...		Lus10019753 [exp]	0	1
AT3G51990			Protein kinase superfamily pro...		Lus10016371 [exp]	2.2	0.8869
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009459 [exp]	5.7	0.9012
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10017304 [exp]	6.9	0.8968
AT3G03210			unknown protein		Lus10031359 [exp]	10.5	0.8937
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016897 [exp]	11.0	0.8936
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10034651 [exp]	14.4	0.8797
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Lus10029163 [exp]	16.4	0.8075
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10043408 [exp]	16.9	0.8682
AT2G17800		ARAC1, ATGP2, A...	RHO-RELATED GTPASES FROM PLANT...		Lus10041881 [exp]	16.9	0.8633
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10015069 [exp]	20.3	0.8777

Compare expression of checked genes

Lus10019753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.