Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09230 247 / 8e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G16380 48 / 1e-05 PAB6 poly(A) binding protein 6 (.1) AT2G30260 42 / 0.0004 U2B'' U2 small nuclear ribonucleoprotein B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016372 [exp] 668 / 0 AT1G09230 392 / 1e-132 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10042240 [exp] 47 / 2e-05 AT2G30260 352 / 2e-124 U2 small nuclear ribonucleoprotein B (.1) Lus10026413 [exp] 47 / 2e-05 AT2G30260 350 / 1e-123 U2 small nuclear ribonucleoprotein B (.1) Lus10030207 [exp] 42 / 0.001 AT4G00830 601 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10002063 [exp] 42 / 0.001 AT4G27000 275 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G054300 [exp] 528 / 0 AT1G09230 253 / 3e-79 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.019G031700 [exp] 344 / 1e-115 AT1G09230 273 / 2e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.019G121400 [exp] 48 / 4e-06 AT2G30260 305 / 7e-106 U2 small nuclear ribonucleoprotein B (.1) Potri.013G153700 [exp] 45 / 3e-05 AT2G30260 297 / 8e-103 U2 small nuclear ribonucleoprotein B (.1) Potri.005G198500 [exp] 45 / 7e-05 AT1G22760 623 / 0.0 poly(A) binding protein 3 (.1) Potri.002G062700 [exp] 45 / 0.0001 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.001G191500 [exp] 44 / 0.0002 AT3G16380 370 / 5e-122 poly(A) binding protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10019754 pacid=23139189 polypeptide=Lus10019754 locus=Lus10019754.g ID=Lus10019754.BGIv1.0 annot-version=v1.0 ATGGCTGGATTTCCTCCTCCTCCCCAACAACACACTTTAATCGGCAGTATCCAGCTGGAGCACTCCGGGTGTCAAGCCATCGACGCGAAGATAGAAACAT CGCAGAATGATCCACTGGTAGCTATACTCTTAGTTCGTCATCTTCCTGAGGGCATCCCTCACCATACTCTTCCCCGCCTCTTCTCTCACTACGGCGCTCA CTCGGTGCGCCCCTGCACTGCCGGAAGATTGAGAAACTGTGCTTTTGTTGATTTCAAGAATGATGCAGTGGCTTATCAAGCACAGCGCCAGTTGAATGGG CTTAGGTTTCTTGGCAAAGTCTTAGCAGTTGAGAGAGCTAACAAGAGAAATGAGGAGCACAGAGGTAAACAAAGTGATGATCAAGGAAGGAAGGACAATG CGGAGGATGCTCACACCACAGGAAGAGACTTTAATGTGAACTCTAAACCAGGATCTTTTCAGGGTAGTGAGCCAATTGCTCCAAAACTTGGTGTGGACTA TCCATTTCCTCCTCACTTGGAGTATGCCTACCCGCCACCTGATGGAAACATACTGACGAATATCGTGAATGCCCTCATTGCAGTTCCTCAGTTTTATACT CAGGTGTTGCATTTGATGAACAAGATGAACATTCCAGCTCCATTTCGCATGGCATTGCCAACTCCACCTTTACCCCCTTCCGAATCAGCATCAGCACCGC CACCACCTCCACCTCCACTGGTTGAATCAAATCGCCAATCAGAAGATGCATCCAGTAGTGATGAGTCGGAATTGGAGACTTCTGAAGAGGATGTAGATGA CAAAAGCACTGCTCATGGATCCACAGTGAAGCCTCGCCGAAAGCGCAGAAGAGGAGAGGCAATTGTGGGACCTGCAGTTGATAAACAAGTGGCACATGAG GCCGTGGGATTGAAAAATGCCTCCTTGCTCCCAAAGGAAATCCCAGTCATAAAGAAGAGAAACCCGATGTTACAGATCAAAATTGTCCCCAAAGAAGTTC AGAAAGAGAACAAAGATAGTGGTGTTGCAGCTGAATCTGTGGATGCTGAGACTCGGATTCCAAATGATAAAGCCTTTGTTTCACCAGAAGAAATACGAAG TAATAAGCTGGCACCTGAGGAAATCCTGTCACTGCCAAAGTTCAAGAACTACACCGTAGGGAATCCAGCAACAGTACTATACATAAAGAACCTGGCAAAA GACGTGGTTTCAGATGACTTCTCCTATGTATTTGGGTCAGTATTTGGGAGCACTGAAGCAGCTAAAGCTAGTCTTAACGTCAAGTTGATGCAGGAGGGGA GGATGAGGGGACAGGCTTTCGTCACATTCCCATCAATCGAACTTGCCCAGCAGGGTCTGAATCTAGTTAACGGTTACATGTTCAAGGGCAAGCCGATGAT CGTCCAGTTCGGGCGCAATCCTTCAGCTGGGCGACAAGACGAATAG
AA sequence Show only first row Show all	>Lus10019754 pacid=23139189 polypeptide=Lus10019754 locus=Lus10019754.g ID=Lus10019754.BGIv1.0 annot-version=v1.0 MAGFPPPPQQHTLIGSIQLEHSGCQAIDAKIETSQNDPLVAILLVRHLPEGIPHHTLPRLFSHYGAHSVRPCTAGRLRNCAFVDFKNDAVAYQAQRQLNG LRFLGKVLAVERANKRNEEHRGKQSDDQGRKDNAEDAHTTGRDFNVNSKPGSFQGSEPIAPKLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPQFYT QVLHLMNKMNIPAPFRMALPTPPLPPSESASAPPPPPPPLVESNRQSEDASSSDESELETSEEDVDDKSTAHGSTVKPRRKRRRGEAIVGPAVDKQVAHE AVGLKNASLLPKEIPVIKKRNPMLQIKIVPKEVQKENKDSGVAAESVDAETRIPNDKAFVSPEEIRSNKLAPEEILSLPKFKNYTVGNPATVLYIKNLAK DVVSDDFSYVFGSVFGSTEAAKASLNVKLMQEGRMRGQAFVTFPSIELAQQGLNLVNGYMFKGKPMIVQFGRNPSAGRQDE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Lus10019754 [exp]	0	1
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10033185 [exp]	2.2	0.8585
AT3G26990			ENTH/VHS family protein (.1)		Lus10020327 [exp]	3.5	0.8408
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10017320 [exp]	6.6	0.8284
AT5G41580			RING/U-box superfamily protein...		Lus10024682 [exp]	8.9	0.8232
AT5G25800			Polynucleotidyl transferase, r...		Lus10029748 [exp]	9.6	0.8330
AT1G08680		ZIGA4, AGD14	ARF-GAP domain 14, ARF GAP-lik...		Lus10020306 [exp]	11.7	0.8057
AT5G44150			unknown protein		Lus10018632 [exp]	12.7	0.8074
AT5G48385			FRIGIDA-like protein (.1)		Lus10008744 [exp]	15.9	0.8085
AT1G48950			C3HC zinc finger-like (.1)		Lus10027238 [exp]	16.7	0.8036
AT5G54930			AT hook motif-containing prote...		Lus10016478 [exp]	17.3	0.7990

Compare expression of checked genes

Lus10019754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.