Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13800 588 / 0 CRN1, PPH Co-regulated with NYE1, pheophytinase (.1.2) AT4G36530 136 / 6e-36 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G19850 109 / 4e-26 alpha/beta-Hydrolases superfamily protein (.1) AT5G38520 97 / 1e-21 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G07470 88 / 6e-20 PMSR3, ATMSRA3 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 3, peptidemethionine sulfoxide reductase 3 (.1) AT5G61640 87 / 1e-19 PMSR1, ATMSRA1 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) AT4G25290 89 / 3e-18 DNA photolyases;DNA photolyases (.1) AT5G07460 84 / 3e-18 PMSR2, ATMSRA2 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 2, peptidemethionine sulfoxide reductase 2 (.1) AT4G25130 82 / 3e-17 PMSR4 peptide met sulfoxide reductase 4 (.1) AT1G52750 56 / 7e-08 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016369 [exp] 811 / 0 AT5G13800 483 / 2e-168 Co-regulated with NYE1, pheophytinase (.1.2) Lus10005320 [exp] 644 / 0 AT5G13800 551 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Lus10028315 [exp] 140 / 7e-37 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10041763 [exp] 124 / 4e-31 AT4G36530 484 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10025172 [exp] 120 / 3e-28 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10033039 [exp] 107 / 9e-27 AT5G61640 256 / 6e-88 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) Lus10013673 [exp] 106 / 1e-26 AT5G07470 185 / 4e-60 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 3, peptidemethionine sulfoxide reductase 3 (.1) Lus10031137 [exp] 101 / 2e-22 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10032504 [exp] 89 / 2e-19 AT4G25130 348 / 6e-122 peptide met sulfoxide reductase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G054800 [exp] 624 / 0 AT5G13800 610 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Potri.005G121000 [exp] 138 / 3e-36 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G219700 [exp] 103 / 1e-23 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G087600 [exp] 98 / 2e-23 AT5G61640 261 / 8e-90 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) Potri.012G091100 [exp] 96 / 8e-23 AT5G61640 251 / 9e-86 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) Potri.019G063900 [exp] 96 / 2e-21 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.012G115800 [exp] 89 / 8e-20 AT4G25130 351 / 3e-123 peptide met sulfoxide reductase 4 (.1) Potri.015G129500 [exp] 91 / 7e-19 AT4G25290 809 / 0.0 DNA photolyases;DNA photolyases (.1) Potri.015G112268 [exp] 85 / 3e-18 AT4G25130 351 / 4e-123 peptide met sulfoxide reductase 4 (.1) Potri.010G158800 [exp] 48 / 9e-06 AT1G13820 489 / 4e-175 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01625 [flax] [poplar] PMSR Peptide methionine sulfoxide reductase CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10019755 pacid=23139227 polypeptide=Lus10019755 locus=Lus10019755.g ID=Lus10019755.BGIv1.0 annot-version=v1.0 ATGGAAGTGATTCCCCTTAGTACTACTACCTCAAGGTTTCAAGTATTGAATCTGAGGTGGCGAGTGGTTAATAGAAACTCAACCCCTCTAATTTCTCTTC CTATATCAAAACACAGAAGAGGGTTTTCTATATCAGCTAGCATCAACGAGTTTGGCATCCTAAGGGAACCAAAGAAGAAGGCCAACTCAAAGGTTTTGAG TGGGAAGACTGATAGCTATGTGATTGGAGAGAATGGAAAACTGGATAGTGTTGTACCAAAAGGGAAAGTCTTGATTCCAGGTTTGCCAGATGAACCCAGC AGTGCTTCAGTAAGCAGTGGCTTCTGGGAATGGAAACCTAAGATGAATGTGCACTACGAGAGAGCTGGCTGTGAGAATCTGGAATCTCCACAGGTGCTGT TTCTTCCAGGTTTTGGGGTTGGTTCTTTTCATTATGAGAAGCAATTGAAGGATTTGGGTCGCCAGTATAGGGTTTGGGCTGTTGATTTTCTGGGGCAAGG TTTGTCTCTGCCTGTTGACAATCCCACTAATTTACTGTTGAGTCAAGAAGGTGGCGACTCTCCAATGTGGGGATTTGGAGATGAAGCTGAACCTTGGGCT AGTGAGCTTGTTTATTCTGTTGATCTATGGCGGGATCAGGTCCGCTACTTCGTAGAAGAGGTAATTGGCGAACCTGTCTATATCGTGGGGAACTCGTTGG GAGGATACGTTGCACTCTACTTTGCAGCAGAACATCCCGAATTGGTTAAGGGTGTGACGTTACTTAACGCGACTCCTTTCTGGGGATTCTTGCCGAATCG TGTCAAGTCGCCAGCATGGGCAAGAGTGTTCACCTGGTCAGGAACATTTCCTCTGCCTCCAAGGGTGAAAAAGATTATGCACTTCTTATGGCAGAAGTTT AGTGATCCTAGAAGCATCGCGGAGATACTTAAACAAGTCTATGCAGATCATTCGACTGACGTGGATAAGGTATTCTCTCGTATCGTGGATATAACTCAAC ATCCTGCAGCCGCTGCATCATTTACCTCGATCATGTTTGCTCCGAGGGGAGAACTATCCTTCTCGGAGGCACTCTCCAGATGCAAAACGAGTGATATACC GATCTGTCTTGTGTACGGGAAAGAAGATCCTTGGGTGAACCCTATATGGGGCCACCTCGCGAAGCGTGAGGTCCCCCAGGCTCCATACTATGAGCTTAGC CCTGCCGGTCACTGCCCCCACGATGAAGTTCCTGAGGTAGTGAACTACATCCTACGTGGGTGGATCAAGAACCTGGAATCGGGCGGTTCGTTTGATTTGC CTCTGCTTGATTATGGACAGGGTGTCGAGACTGACACTTCCAGACGTCTCGAATTTGCGAGAGGAGGGTCAAAGAAGTCGGTGGACGTGAAGCTGGTTGG TTCTGGGCGGACTTTCTGGGAACAGATGAGGTTTAACTCGATCAAGGAAAAGAAGGTCGTCACCGAGATACTTCCGGCTAAGAGATTCTACAGGGCGGAA GAGTATCATCAGCAGTACTTGGAGAAGGGCGGTGGCAGAGGCAGTAAACAATCTTCTGCTAAGGGGTGCAACGATCCCATCCGCTGTTACGGCTAA
AA sequence Show only first row Show all	>Lus10019755 pacid=23139227 polypeptide=Lus10019755 locus=Lus10019755.g ID=Lus10019755.BGIv1.0 annot-version=v1.0 MEVIPLSTTTSRFQVLNLRWRVVNRNSTPLISLPISKHRRGFSISASINEFGILREPKKKANSKVLSGKTDSYVIGENGKLDSVVPKGKVLIPGLPDEPS SASVSSGFWEWKPKMNVHYERAGCENLESPQVLFLPGFGVGSFHYEKQLKDLGRQYRVWAVDFLGQGLSLPVDNPTNLLLSQEGGDSPMWGFGDEAEPWA SELVYSVDLWRDQVRYFVEEVIGEPVYIVGNSLGGYVALYFAAEHPELVKGVTLLNATPFWGFLPNRVKSPAWARVFTWSGTFPLPPRVKKIMHFLWQKF SDPRSIAEILKQVYADHSTDVDKVFSRIVDITQHPAAAASFTSIMFAPRGELSFSEALSRCKTSDIPICLVYGKEDPWVNPIWGHLAKREVPQAPYYELS PAGHCPHDEVPEVVNYILRGWIKNLESGGSFDLPLLDYGQGVETDTSRRLEFARGGSKKSVDVKLVGSGRTFWEQMRFNSIKEKKVVTEILPAKRFYRAE EYHQQYLEKGGGRGSKQSSAKGCNDPIRCYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10019755 [exp]	0	1
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10016369 [exp]	1.0	0.9794
AT3G30390			Transmembrane amino acid trans...		Lus10031964 [exp]	2.6	0.9664
AT1G21000			PLATZ transcription factor fam...		Lus10000952 [exp]	2.8	0.9781
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10027931 [exp]	2.8	0.9732
AT2G26670		GUN2, ATHO1, TE...	REVERSAL OF THE DET PHENOTYPE ...		Lus10030092 [exp]	3.0	0.9650
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10014587 [exp]	4.0	0.9653
AT1G58030		CAT2	cationic amino acid transporte...		Lus10001334 [exp]	5.5	0.9677
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	6.2	0.9740
AT3G26100			Regulator of chromosome conden...		Lus10006242 [exp]	6.2	0.9599
AT4G27745			Yippee family putative zinc-bi...		Lus10007773 [exp]	7.1	0.9577

Compare expression of checked genes

Lus10019755 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.