Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43920 1287 / 0 DCL3, ATDCL3 dicer-like 3 (.1.2.3) AT1G01040 672 / 0 SIN1, EMB76, EMB60, CAF, ASU1, SUS1, DCL1, ATDCL1 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) AT5G20320 607 / 0 DCL4, ATDCL4 dicer-like 4 (.1.2) AT3G03300 549 / 4e-169 ATDCL2, DCL2 dicer-like 2 (.1.2.3) AT3G20420 97 / 8e-21 RTL2, ATRTL2 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1) AT5G45150 87 / 8e-17 RTL3 RNAse THREE-like protein 3 (.1) AT4G15417 82 / 2e-16 ATRTL1 RNAse II-like 1 (.1) AT2G33730 54 / 1e-06 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G42520 53 / 2e-06 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 51 / 6e-06 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016367 [exp] 2917 / 0 AT3G43920 1457 / 0.0 dicer-like 3 (.1.2.3) Lus10005142 [exp] 442 / 3e-130 AT1G01040 2012 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10019588 [exp] 432 / 3e-129 AT5G20320 1152 / 0.0 dicer-like 4 (.1.2) Lus10030176 [exp] 335 / 2e-96 AT1G01040 972 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10030177 [exp] 327 / 2e-96 AT1G01040 1138 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10036447 [exp] 311 / 3e-86 AT3G03300 1405 / 0.0 dicer-like 2 (.1.2.3) Lus10019587 [exp] 179 / 2e-47 AT5G20320 556 / 0.0 dicer-like 4 (.1.2) Lus10005141 [exp] 147 / 6e-38 AT1G01040 569 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10040013 [exp] 138 / 9e-35 AT5G20320 318 / 6e-98 dicer-like 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G047500 [exp] 1971 / 0 AT3G43920 1518 / 0.0 dicer-like 3 (.1.2.3) Potri.006G188800 [exp] 624 / 0 AT5G20320 1733 / 0.0 dicer-like 4 (.1.2) Potri.008G075900 [exp] 585 / 0 AT3G03300 1567 / 0.0 dicer-like 2 (.1.2.3) Potri.010G181400 [exp] 575 / 2e-178 AT3G03300 1548 / 0.0 dicer-like 2 (.1.2.3) Potri.002G181400 [exp] 367 / 5e-103 AT1G01040 2835 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Potri.002G226700 [exp] 116 / 4e-28 AT4G15417 244 / 1e-80 RNAse II-like 1 (.1) Potri.006G218850 [exp] 81 / 2e-18 AT3G43920 79 / 4e-19 dicer-like 3 (.1.2.3) Potri.011G086700 [exp] 85 / 4e-17 AT3G20420 356 / 9e-122 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1) Potri.019G130900 [exp] 55 / 4e-07 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.012G045800 [exp] 54 / 1e-06 AT2G33730 994 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0539 [flax] [poplar] RNase_III PF00636 [flax] [poplar] Ribonuclease_3 Ribonuclease III domain CL0196 [flax] [poplar] DSRM PF03368 [flax] [poplar] Dicer_dimer Dicer dimerisation domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0638 [flax] [poplar] PAZ PF02170 [flax] [poplar] PAZ PAZ domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10019757 pacid=23139184 polypeptide=Lus10019757 locus=Lus10019757.g ID=Lus10019757.BGIv1.0 annot-version=v1.0 ATGTGCGACCCCATTAACCCTCTCAAGAGAAGCATTGACGAGATGATCAACCCTACCACTGATGTGGGGGATGACGTTCCCCTCATCACCGCCGGTCAAA ATTCCGCCACCGAACCGCCGGCTCCCTCATCTTCCGGCGAGGACTTCACACCCAGAAGTTATCAGTTGGATGTTTATGAGGTCGCTAAGCAGAGGAACAC CATAGCTATGTTGGATACGGGTGCTGGCAAGACTATGATAGCTGTGATGTTGATCAGGGAGATTGGTCAGAAAATCAAGTCCTCCCCCAGCAAGAAATTG ATATTATTCTTGGCCCCTACCGTTCATCTTCAATATGAGGTGATCAAAGCTCACACCACTTTTGATGTGGGAGTGTACTTCGGCGCTAAGGGGGTGGATT CTTGGAAATTGAGTCACTGGCAGAAAGAAATTGATGAACATGATGTATTGGTCATGACACCACAGATACTCTTGGATGCTCTAAGAAATGCATTCATCAA TCTGGAAATGGTATCCTTGGTGATATTTGACGAGTGTCATCGTGCTACGGGCAATCACCCTTATGTTAAGATAATGAAGGGCAAAGTTCTTATGTTCACT GTTATGTTTTTCAAGGAGTTCTATGTGAATGGCAATGCAAAACCGAAGGTGTTTGGTATGACAGCATCACCTGTTGCTAAAAAGGGGCTATCTTCTTCTC GAGATTGTGAAGATCAGATGTCGGAACTTGAGAGCATATTGGATTCTCAGATTTATACGATCAAAGACAGGTCAGAGATGGAAATATATGTTCCATCGGC AAAAGAAACTTGTAGATTCTACGATAAAGCTCGGTTTTGTGCTGCTGATATTAAAGCTGAGATTCAAACATCTTGGTCCAAGTTTGATGGTATAATTGCA AATATGCAAGGGTCAATGCAAAATGGTTGTAAAGATATGGAGGATAAAGTCAAGGAGCTGAGAAGGCGATTGTCTAATGAGCATGCAAAGATTGTGAACT GCCTAGAAGATCTTGGCCTTAAATGTGCTTATGAGGCTGTTGAAGTGTGTTTAGAGAAATCTCCTAATTCTTTCCCGGAATGTGAAACGTATAGAGAAAT TTCTCAGCAACGCAAAAACTTCCTTGAAGAAGTAGCATCCAAAATTGGGAAATCCTTGGCACCTGGTGATGCTTATATGCTGGATTCTGGTTTTGACTAT TTCAAGGCAGTAGATTCAGGTTATATGTCACCAAAGCTATATGAACTTCTTCAGCTTTTCCTATCATTTGGCAGAGCTACAGAGGTACTGTGCCTCATAT TTGTGGACAGAATAATCACCGGTAAAGTGATTGAGAGATTTGTGAGCAAAGTAGCAGTTTTGATGCACTTTGCTGTATCTTATTTAAGTGGAACCAGTAC ATCAGTTGATGCACTGGCACCTAAACTGCAGAGAGAAATCTTGGAAGCATTTCGCTCCGGCAAGGTGAATCTATTATTTGCCACTGATGTGGTAGAGGAG GGTATTCATGTGCCAAAATGCTCCTGTGTTGTACGTTTTGACCTTCCTAAGACAGTACGCAGTTATGTACAGTCTCGGGGAAGAGCTCGTCAACATAATT CCATGTTTGTCACTATGCTTGAGAGGGGAAATGAGAAACAGAGGGATCAACTGTTCAATGTCATCAGAAGTGAGTGGTCCATGAGAGATACAGCTAGTAA TCGAGACCCTGAGTTTTGGACTGCAAAAGCTTGTTCCCAAACTGAGTTGAAGGCTTATGTCGTAGATAGGACTGGGGCTTTAGTTACTGCTGACTCCAGC ATTAGCCTCTTAAACAAGTATTGTGAAAAGCTTCCCGGTGACAGAAATTACCCACCAAGGCCAACTTTTGAATTTGAGCTTGTCGAAAAGGCTTACCGGT GTCAGATAAAGTTACCACCTTCTGCCATATTCCAAACGCTAGCTGGTCCAGTCAGTAGAAATCAACAACTAGCGAAACAGCTGGCTTGCTTGGAAGCTTG TAAGAAGCTGCATCAGATGGGTGGCTTAGATGATCATCTTCTAGCAGCATCTGAAGAACCTTCATCATTCCCTCAAAAAAAGGAAGAGCCTTCATCGGAG AAACAGCTTATGCCGAAAAGTAAAAAAGCATCCGCAGGTGCAGGTAGTACAAAGAGGAAGGAGTTGCATGGTACAATTCGCATCCGTGCATTATCATGCA GCTCGGAAGGAAAACTTGATGGAGCTACTTTCCATTCCTATAAGTTTGACTTCTCCTGTAACGTTTCCAGCCACATTTATTCCAGTTTTGTTCTTCTGAC TGAAGCAATGCTTGATGATGATGTGGGAAACATTGAACTGGATCTTTATTTAGTCGGAAAGAGAGTTAAGGCCTCTGTTTCTTCATGTGGGGAGCTGCAT TTGGATAATGAGCAGATCATAAAAGCGAAGTGCTTTCAGGGACTTCTTTTCAATGGTCTGTTCGGGAGATTGTTCACTGGATCCAGAAAAAGTGGAACCC CAAGGGAGTTCTTACTTTCAGTTGAAACAGCACTTTGGAGTCCGTCATATATGTATCTCCTTCTGCCTATTGAAACGTCTTGTACCTCAAACACAGAATC TTTGTCAGTAAATTGGTCAGGGATAAGTGCTTGCACTTCTGCTGCAACATTTATGACAAAAAACTCCTTGGGCGGTGATAGTTGTGACAGCAGAGATCAA TCAATTAATACAGTTGGATTAACTGTTCCAGAATCCAACGGCTCCAAGATATTCAACTTCGCTAATGTTTCAGTTGATATCAACAATGTGATGGATAGGG TTTTCTTGGCTGTTCACACTGGCAAGGTATATTCAATTGCAGAAGCCGTCGATGACATGTCTGCAGAGAGTCCTTTTGATGGAAATGATGATAATACAGC TGCAAAGTACTCAACGTTTGCTGACTATTACAATAGGAGATATGGAATCGTACTCAAGCATCCAAGGCAGACTATGTTGCGTTTAAAGCAAAGCCACAAT CCACATAACCTTCTTATGGACTTCCATGATGAAGGTGTATCAAAAGACAGCAGCATTGTGCAAAAACAGCGATTTTATGCTCATCTCCCCCCTGAGGTTC TAATTGTCATTGATATTCCGAGCTCTGTTCTAAAATCTATGTACTTGCTTCCATCCATGATGCATCGTCTGGAGTCTCTGATGCTAGCAAGTCAACTTCG ACAAGACATTGATTTTACGGCAGCAAACTTTCACATTTCGAGCTCACTGATTCTAGAAGCAATATCAACACGGAGATGTTGTGAGAACTTCTCTTTTGAG CGACTGGAGTTGATAGGGGATTCAGTTTTGAAGTATGCTGTTGGTTGCCATCTGTTTCTGAAGCATCCTGATCAACACGAAGGCCAATTATCTGGTTCTC GCTCACATTTGGTCTGCAACTCAACACTGCACAAATTCGGAATAGAATGCAAAATACAGGAATATATACGGGATGGTGCGTTCGACCCACGTCGTTGGGT TGCTCCAGGACAGCAAACTTTGCGGCCAGTACCATGCAAATGTGGAATTGATACGTTAGAAGTTCCTTTGGATGCCAAATTTCAGTCGGAGGATTCAAAA ATTAAAGTTGGAATCAGTTGTGATTTGGGACATAGATGGATGGGTTCTAAAACTGTGTCCGACTGTGTTGAAGCAATCATAGGAGCTTACTATGTGGCAG GTGGACTGGTGGCTGCACTGCATGTGATGAAGTGGATCGGTATTGACCTGGAACTTGATACTCAATCTGTTCTTCAAGCCATTAACAGTGCTCCCTCGCG AACGTCTATCCCAAGTGATATTGAGGTGACGAGCCTTGAATCAGCGCTGGGTTACACATTTAATGCAAAGTTTCTCTTGTTGGAGGCGGTGACACATCCA TCAATGAAGGAACAGGGAGAAAAGTATTGCTATCAGAGGCTTGAATATCTGGGGGACTCGGTTTTGGATTTGCTAATCACAAGACATCTGTATGAAAACC ACAAAGACCTAGATCCTGGCGAGTTAACAGATCTACGTTCGGCTTCCGTTAACAATGAGAGTTTTGCTCAAGTTGCTGCTCTTGGCGACCTGGTCGAAAG CATTGCTGGGGCAGTACTGTTGGATGCTAACCTCAATTATGAGGAAGTCTGGAGAATATTCGAGCCTCTTCTATCTCCGATTGTGACACCAGAAAAACTC GAGCTGCCTCCATATCGTGAGTTGGTTGAATTGTGTGGCTCTCTGGGATGTTTCACAAAGGAAGATTGTACGAACAAAGGGGATATGGTGCACGCTAAGC TTACCTTACAGCTCGATGATGCCCTCCTAGTTGGGGAGGGGCATGATCAAAAGAAAAAGTATGCCAAAGGGAAAGCAGCTTCTCAACTGTTAAAGGAGCT TGAGAAAAGAGGGCACTCAAGGGCTGGTACAAAGAAGAGGAAGTACGAGACAGACTGTATTTCTGCATCAAATCCTATGGGCTTGGAGACTGAAGATCTG ACTGTAACAACCAAGGTCAAGATCCAGAAGACTGAGGAAAATTTGCCAGCAGCGACAGATGGAGCTCCTTTCATTCAAAGCACAGCGACTCCAGTTATCG AATCAATCAACATGACGAAAGGAGGACCTCGAAACACTCTTTTCCATCTATGCAAGAGAGAACAATGGACATTGCCCACTTTTGAAACAACAGAACAAAG ATTCAGCACGCCAGTGGAAGTTGGTAATGACAACAACAAAAGAAGTGTGTTGAACACCTTCACAGCCAAAATCACGTTGAAAATACCGTTGTTCGGGGTG ATCGAATGCGATGGGTCTGCCAGCGCAGATAAGAAGAGTGCTTACGACTCGGCATCTGTCGTCATGCTTAATGTGCTTCAAACCAACCAGCTACTTATAA TCTCTGGCCAATGA
AA sequence Show only first row Show all	>Lus10019757 pacid=23139184 polypeptide=Lus10019757 locus=Lus10019757.g ID=Lus10019757.BGIv1.0 annot-version=v1.0 MCDPINPLKRSIDEMINPTTDVGDDVPLITAGQNSATEPPAPSSSGEDFTPRSYQLDVYEVAKQRNTIAMLDTGAGKTMIAVMLIREIGQKIKSSPSKKL ILFLAPTVHLQYEVIKAHTTFDVGVYFGAKGVDSWKLSHWQKEIDEHDVLVMTPQILLDALRNAFINLEMVSLVIFDECHRATGNHPYVKIMKGKVLMFT VMFFKEFYVNGNAKPKVFGMTASPVAKKGLSSSRDCEDQMSELESILDSQIYTIKDRSEMEIYVPSAKETCRFYDKARFCAADIKAEIQTSWSKFDGIIA NMQGSMQNGCKDMEDKVKELRRRLSNEHAKIVNCLEDLGLKCAYEAVEVCLEKSPNSFPECETYREISQQRKNFLEEVASKIGKSLAPGDAYMLDSGFDY FKAVDSGYMSPKLYELLQLFLSFGRATEVLCLIFVDRIITGKVIERFVSKVAVLMHFAVSYLSGTSTSVDALAPKLQREILEAFRSGKVNLLFATDVVEE GIHVPKCSCVVRFDLPKTVRSYVQSRGRARQHNSMFVTMLERGNEKQRDQLFNVIRSEWSMRDTASNRDPEFWTAKACSQTELKAYVVDRTGALVTADSS ISLLNKYCEKLPGDRNYPPRPTFEFELVEKAYRCQIKLPPSAIFQTLAGPVSRNQQLAKQLACLEACKKLHQMGGLDDHLLAASEEPSSFPQKKEEPSSE KQLMPKSKKASAGAGSTKRKELHGTIRIRALSCSSEGKLDGATFHSYKFDFSCNVSSHIYSSFVLLTEAMLDDDVGNIELDLYLVGKRVKASVSSCGELH LDNEQIIKAKCFQGLLFNGLFGRLFTGSRKSGTPREFLLSVETALWSPSYMYLLLPIETSCTSNTESLSVNWSGISACTSAATFMTKNSLGGDSCDSRDQ SINTVGLTVPESNGSKIFNFANVSVDINNVMDRVFLAVHTGKVYSIAEAVDDMSAESPFDGNDDNTAAKYSTFADYYNRRYGIVLKHPRQTMLRLKQSHN PHNLLMDFHDEGVSKDSSIVQKQRFYAHLPPEVLIVIDIPSSVLKSMYLLPSMMHRLESLMLASQLRQDIDFTAANFHISSSLILEAISTRRCCENFSFE RLELIGDSVLKYAVGCHLFLKHPDQHEGQLSGSRSHLVCNSTLHKFGIECKIQEYIRDGAFDPRRWVAPGQQTLRPVPCKCGIDTLEVPLDAKFQSEDSK IKVGISCDLGHRWMGSKTVSDCVEAIIGAYYVAGGLVAALHVMKWIGIDLELDTQSVLQAINSAPSRTSIPSDIEVTSLESALGYTFNAKFLLLEAVTHP SMKEQGEKYCYQRLEYLGDSVLDLLITRHLYENHKDLDPGELTDLRSASVNNESFAQVAALGDLVESIAGAVLLDANLNYEEVWRIFEPLLSPIVTPEKL ELPPYRELVELCGSLGCFTKEDCTNKGDMVHAKLTLQLDDALLVGEGHDQKKKYAKGKAASQLLKELEKRGHSRAGTKKRKYETDCISASNPMGLETEDL TVTTKVKIQKTEENLPAATDGAPFIQSTATPVIESINMTKGGPRNTLFHLCKREQWTLPTFETTEQRFSTPVEVGNDNNKRSVLNTFTAKITLKIPLFGV IECDGSASADKKSAYDSASVVMLNVLQTNQLLIISGQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10019757 [exp]	0	1
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10005023 [exp]	1.4	0.9677
AT5G67610			Uncharacterized conserved prot...		Lus10019263 [exp]	2.4	0.9314
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10027350 [exp]	2.4	0.9642
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10002748 [exp]	2.4	0.9513
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10016367 [exp]	2.8	0.9447
AT2G36490		DML1, ROS1	REPRESSOR OF SILENCING1, demet...		Lus10035576 [exp]	3.2	0.9326
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Lus10023257 [exp]	3.6	0.9231
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Lus10006741 [exp]	5.2	0.9270
AT1G18450		ATARP4	actin-related protein 4 (.1)		Lus10032484 [exp]	7.2	0.9044
AT5G59250			Major facilitator superfamily ...		Lus10040771 [exp]	7.3	0.8904

Compare expression of checked genes

Lus10019757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.